View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17617_high_21 (Length: 234)
Name: NF17617_high_21
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17617_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 50194892 - 50195106
Alignment:
| Q |
1 |
atactatttagtagttatgtgtgaaataaaaagaaatgagacattctcaaaaacgaaatatgtgcattcataaaaggtaaaattgtcattttgggcagaa |
100 |
Q |
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| T |
50194892 |
atactatttagtagttatgtgtgaaataaaaagaaatgagacattctcaaaaaggaaatatatgcattcataaaaggtaaaattgtcattttgggcagaa |
50194991 |
T |
|
| Q |
101 |
aatattgcaagaactaaacatatgtttaaaccttacaaaaacataagaaaagtaacttgaaaagaagtcaaaaatatcaacctcacgagacctttagcgg |
200 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50194992 |
aatattgcaacaactaaacatatatttaaaccttacaaaaacataagaaaagtaacttgaaaagaagtcaaaaatatcaaccttacgagacctttagcgg |
50195091 |
T |
|
| Q |
201 |
agtataatatagatg |
215 |
Q |
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| T |
50195092 |
agcataatatagatg |
50195106 |
T |
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