View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17617_high_22 (Length: 228)

Name: NF17617_high_22
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17617_high_22
NF17617_high_22
[»] scaffold0164 (1 HSPs)
scaffold0164 (15-209)||(12108-12305)
[»] chr6 (2 HSPs)
chr6 (100-220)||(18700005-18700125)
chr6 (53-150)||(8891056-8891153)
[»] chr5 (1 HSPs)
chr5 (53-152)||(40883368-40883467)
[»] chr4 (1 HSPs)
chr4 (103-171)||(51035187-51035255)
[»] chr7 (1 HSPs)
chr7 (96-166)||(10208622-10208692)
[»] chr3 (1 HSPs)
chr3 (56-221)||(48118104-48118275)
[»] chr1 (1 HSPs)
chr1 (96-152)||(33358293-33358349)


Alignment Details
Target: scaffold0164 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 12108 - 12305
Alignment:
Q  15 gatagaacaacaacaaagacagttgagaagnnnnnnnn--catggaatattgtgagaaacatgaaagaaattattattcactcaaaaagaaaaatgaaa- 111  Q
    ||||||||||||||||||||||||| ||||          ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||     
T  12108 gatagaacaacaacaaagacagttgggaagaaaaaaaaatcatggaatattgtgaaaaacatgaaagaaattattattcactcaaaatgaaaaatgaaaa 12207  T
Q  112 caaatgatgatcataaagagtggaattagaaacacgtacatcctacatgcactctctttgaatttattgagaaattgagtcatgggaacattagtgaa 209  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12208 caaatgatgatcataaagagtggaattagaaacacttacatcctacatgcactctctttgaatttattgagaaattgagtcatgggaacattagtgaa 12305  T

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Target: chr6 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 100 - 220
Target Start/End: Original strand, 18700005 - 18700125
Alignment:
Q  100 agaaaaatgaaacaaatgatgatcataaagagtggaattagaaacacgtacatcctacatgcactctctttgaatttattgagaaattgagtcatgggaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18700005 agaaaaatgaaacaaatgatgatcataaagagtggaattagaaacacgtacatcctacatgcactctctttgaatttattgagaaattgagtcatgggaa 18700104  T
Q  200 cattagtgaaccgtctctgct 220  Q
    |||||||||||||||| ||||    
T  18700105 cattagtgaaccgtctttgct 18700125  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 8891153 - 8891056
Alignment:
Q  53 catggaatattgtgagaaacatgaaagaaattattattcactcaaaaagaaaaatgaaacaaatgatgatcataaagagtggaattagaaacacgtac 150  Q
    ||||||| |||||||||||||||||||||||  | |||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8891153 catggaacattgtgagaaacatgaaagaaatggtgattccctcaaaaataaaaattaaacaaatgatgatcataaagagtggaattagaaacacgtac 8891056  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 40883368 - 40883467
Alignment:
Q  53 catggaatattgtgagaaacatgaaagaaattattattcactcaaaaagaaaaatgaaacaaatgatgatcataaagagtggaattagaaacacgtacat 152  Q
    ||||||| |||||||||||||||||||||||  | ||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40883368 catggaacattgtgagaaacatgaaagaaatggtgattccatcaaaaataaaaattaaacaaatgatgatcataaagagtggaattagaaacacgtacat 40883467  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 51035187 - 51035255
Alignment:
Q  103 aaaatgaaacaaatgatgatcataaagagtggaattagaaacacgtacatcctacatgcactctctttg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51035187 aaaatgaaacaaatgatgatcataaagagtggaattagaaacacgtacatcctacatgcactttctttg 51035255  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 10208622 - 10208692
Alignment:
Q  96 aaaaagaaaaatgaaacaaatgatgatcataaagagtggaattagaaacacgtacatcctacatgcactct 166  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||  ||||||||||||    
T  10208622 aaaaataaaaatgaaacaaatgatgatcgtaatgagtggaattagaaacacgtacattatacatgcactct 10208692  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 221
Target Start/End: Complemental strand, 48118275 - 48118104
Alignment:
Q  56 ggaatattgtgagaaacatgaaagaaattattattcactcaaaaagaaaaat------gaaacaaatgatgatcataaagagtggaattagaaacacgta 149  Q
    ||||||||||||||||||||||||| || || |||  |||||||| ||||||      |||||||||||||||| ||| |||||||||||||||||||||    
T  48118275 ggaatattgtgagaaacatgaaagacatgatgattacctcaaaaataaaaataaaaatgaaacaaatgatgatcgtaatgagtggaattagaaacacgta 48118176  T
Q  150 catcctacatgcactctctttgaatttattgagaaatt--gagtcatgggaacattagtgaaccgtctctgctc 221  Q
    | |  |  |  || | |||| |||||||||||||||||  ||| || ||||||||||||||||||||| |||||    
T  48118175 c-ttattgagtca-tgtcttagaatttattgagaaattgagagccacgggaacattagtgaaccgtctttgctc 48118104  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 33358293 - 33358349
Alignment:
Q  96 aaaaagaaaaatgaaacaaatgatgatcataaagagtggaattagaaacacgtacat 152  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  33358293 aaaaataaaaatgaaacaaatgatgatcgtaaagagtggaattagaaacacatacat 33358349  T

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