View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17617_high_25 (Length: 214)
Name: NF17617_high_25
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17617_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 9872877 - 9872691
Alignment:
| Q |
14 |
aaaatatgatttgcaaaattaaattagcaatgcaaagtccatttaatttgattagtactctgacagcagttgatgaaatccatccatgccatggttttaa |
113 |
Q |
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| T |
9872877 |
aaaatttgatttgcaaaattaaattagcaatgcaaagtccatttaatttgattagtactctgacagcagttgatgaaatccatccatgccatggttttaa |
9872778 |
T |
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| Q |
114 |
tgttacttcataagattcttcaactattttctccattttcttttcaggatcttttaatagtatttgtaataatgacgaggtgaaatc |
200 |
Q |
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| T |
9872777 |
tgttacttcataagattcttcaactattttctccattttcttttcaggatcttttaatagtatttgtaataatgacgaggtgaaatc |
9872691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 9879742 - 9879604
Alignment:
| Q |
62 |
tgattagtactctgacagcagttgatgaaatccatccatgccatggttttaatgttacttcataagattcttcaactattttctccattttcttttcagg |
161 |
Q |
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| T |
9879742 |
tgattagtactctgacagcagttgatgaaatccatccatgccacggttttaatgtaacttcatatgattcttcaaccactttctccattttcttttgagg |
9879643 |
T |
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| Q |
162 |
atcttttaatagtatttgtaataatgacgaggtgaaatc |
200 |
Q |
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| T |
9879642 |
atcattggatagtatttgtaataatgaggaggtaaaatc |
9879604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 41036218 - 41036329
Alignment:
| Q |
64 |
attagtactctgacagcagttgatgaaatccatccatgccatggttttaatgttacttcataagattcttcaactattttctccattttcttttcaggat |
163 |
Q |
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| T |
41036218 |
attattactctgtaagcagctgatgcaatccatccatgccatggtttcaaagttgcatcataagactcttgaactgcttgctccatattctttttaggat |
41036317 |
T |
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| Q |
164 |
cttttaatagta |
175 |
Q |
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|||||| ||||| |
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| T |
41036318 |
cttttactagta |
41036329 |
T |
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