View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17617_high_3 (Length: 662)

Name: NF17617_high_3
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17617_high_3
NF17617_high_3
[»] chr3 (1 HSPs)
chr3 (146-369)||(37602064-37602284)
[»] chr1 (1 HSPs)
chr1 (146-369)||(46558707-46558927)
[»] chr5 (2 HSPs)
chr5 (270-373)||(22778625-22778728)
chr5 (146-218)||(22778747-22778820)
[»] chr8 (1 HSPs)
chr8 (425-540)||(17931981-17932096)
[»] chr6 (1 HSPs)
chr6 (425-512)||(23602332-23602419)
[»] scaffold0838 (1 HSPs)
scaffold0838 (431-519)||(1818-1906)
[»] scaffold0832 (1 HSPs)
scaffold0832 (431-519)||(1849-1937)
[»] chr4 (2 HSPs)
chr4 (459-519)||(11012773-11012833)
chr4 (437-528)||(12189863-12189954)
[»] scaffold0352 (1 HSPs)
scaffold0352 (32-71)||(16829-16868)
[»] chr7 (2 HSPs)
chr7 (431-566)||(5760659-5760794)
chr7 (41-69)||(27846676-27846704)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 9e-81; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 146 - 369
Target Start/End: Complemental strand, 37602284 - 37602064
Alignment:
Q  146 ctgaaaaagatttgatcacttgatggcatgataatagtcacataaccataggccatgcattggatttgaagtacaatttgcagatttgtagaaaaagctc 245  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||    
T  37602284 ctgaaaaagatttgatcacttgatggcatgacaatagtcacgtaaccataggccatgcattagatttgaagtacaatttgcagatttgt--aaaaagctc 37602187  T
Q  246 caattggacacgttacatttagattgtaaagtagtgggtttgatggcattattcatgtgtagaacttgcagccatattttaatggtagtagctgatgcct 345  Q
    ||||  |||||||||||||| ||  |||||||||||| |||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  37602186 caatatgacacgttacatttggaccgtaaagtagtggatttgat-gcattactcatgtgtagaacttgcagccatattttgatggtagtagctgatgcct 37602088  T
Q  346 actcatttacatctatttcaataa 369  Q
    | |||||||||||||||| |||||    
T  37602087 attcatttacatctatttgaataa 37602064  T

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Target: chr1 (Bit Score: 153; Significance: 9e-81; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 146 - 369
Target Start/End: Original strand, 46558707 - 46558927
Alignment:
Q  146 ctgaaaaagatttgatcacttgatggcatgataatagtcacataaccataggccatgcattggatttgaagtacaatttgcagatttgtagaaaaagctc 245  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||    
T  46558707 ctgaaaaagatttgatcacttgatggcatgacaatagtcacgtaaccataggccatgcattagatttgaagtacaatttgcagatttgt--aaaaagctc 46558804  T
Q  246 caattggacacgttacatttagattgtaaagtagtgggtttgatggcattattcatgtgtagaacttgcagccatattttaatggtagtagctgatgcct 345  Q
    ||||  |||||||||||||| ||  |||||||||||| |||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  46558805 caatatgacacgttacatttggaccgtaaagtagtggatttgat-gcattactcatgtgtagaacttgcagccatattttgatggtagtagctgatgcct 46558903  T
Q  346 actcatttacatctatttcaataa 369  Q
    | |||||||||||||||| |||||    
T  46558904 attcatttacatctatttgaataa 46558927  T

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Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 270 - 373
Target Start/End: Complemental strand, 22778728 - 22778625
Alignment:
Q  270 tgtaaagtagtggg-tttgatggcattattcatgtgtagaacttgcagccatattttaatggtagtagctgatgcctactcatttacatctatttcaata 368  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| |||  ||||| ||||||||| |||||||||||||||| ||||    
T  22778728 tgtaaagtagtggggtttgatg-cattattcacgtgtagaacttgcagccatattttgatgtaagtagttgatgcctattcatttacatctatttgaata 22778630  T
Q  369 atgtg 373  Q
    |||||    
T  22778629 atgtg 22778625  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 22778820 - 22778747
Alignment:
Q  146 ctgaaaaagattt-gatcacttgatggcatgataatagtcacataaccataggccatgcattggatttgaagta 218  Q
    ||||||||||||| ||||||||||||||||||  ||||||||||| |||||||||||||||| |||||||||||    
T  22778820 ctgaaaaagattttgatcacttgatggcatgacgatagtcacatagccataggccatgcatttgatttgaagta 22778747  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 425 - 540
Target Start/End: Original strand, 17931981 - 17932096
Alignment:
Q  425 aagtggagacctaaggttacaactatttaggaaacaaaagacttgaacaagcttagcatggagaatctgataagctctctaaagagtcatgagataaagc 524  Q
    |||||||| |||||||||||||| ||| | ||| |||| ||||||||||| |||||| || |||||||||||| |||||| |||||||| |||||  |||    
T  17931981 aagtggaggcctaaggttacaaccattcacgaagcaaaggacttgaacaatcttagcctgaagaatctgataacctctctgaagagtcaagagatggagc 17932080  T
Q  525 ttataggtgatgaacc 540  Q
    | |||| | |||||||    
T  17932081 taatagtttatgaacc 17932096  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 425 - 512
Target Start/End: Original strand, 23602332 - 23602419
Alignment:
Q  425 aagtggagacctaaggttacaactatttaggaaacaaaagacttgaacaagcttagcatggagaatctgataagctctctaaagagtc 512  Q
    |||||||| || ||||||||| |||| |||||| ||||| |||| ||||  |||||| ||||||| |||||||||||||| |||||||    
T  23602332 aagtggagcccaaaggttacatctatataggaagcaaaatacttaaacagacttagcttggagaacctgataagctctctgaagagtc 23602419  T

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Target: scaffold0838 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 519
Target Start/End: Complemental strand, 1906 - 1818
Alignment:
Q  431 agacctaaggttacaactatttaggaaacaaaagacttgaacaagcttagcatggagaatctgataagctctctaaagagtcatgagat 519  Q
    ||||| ||||||||||| ||| ||||| |||| ||| |||||||||| ||| |||| ||||||||||| ||||| || || ||||||||    
T  1906 agaccaaaggttacaaccattcaggaagcaaaggacatgaacaagctaagcttggaaaatctgataagttctctcaaaagacatgagat 1818  T

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Target: scaffold0832 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 519
Target Start/End: Complemental strand, 1937 - 1849
Alignment:
Q  431 agacctaaggttacaactatttaggaaacaaaagacttgaacaagcttagcatggagaatctgataagctctctaaagagtcatgagat 519  Q
    ||||| ||||||||||| ||| ||||| |||| ||| |||||||||| ||| |||| ||||||||||| ||||| || || ||||||||    
T  1937 agaccaaaggttacaaccattcaggaagcaaaggacatgaacaagctaagcttggaaaatctgataagttctctcaaaagacatgagat 1849  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 519
Target Start/End: Original strand, 11012773 - 11012833
Alignment:
Q  459 caaaagacttgaacaagcttagcatggagaatctgataagctctctaaagagtcatgagat 519  Q
    ||||||| |||||||||||| |  |||||| |||||||||||||||| |||||||||||||    
T  11012773 caaaagaattgaacaagcttggattggagactctgataagctctctagagagtcatgagat 11012833  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 437 - 528
Target Start/End: Complemental strand, 12189954 - 12189863
Alignment:
Q  437 aaggttacaactatttaggaaacaaaagacttgaacaagcttagcatggagaatctgataagctctctaaagagtcatgagataaagcttat 528  Q
    ||||||||||| ||| ||||| |||| || ||||||||||| ||| || ||||||||||||| ||||| || | ||||| |||| |||||||    
T  12189954 aaggttacaaccattcaggaagcaaaggatttgaacaagctaagcctgaagaatctgataagttctctcaaaattcatgtgatatagcttat 12189863  T

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Target: scaffold0352 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 16829 - 16868
Alignment:
Q  32 gtgtaatgtccgtttcgaattatttaattgagtctagaag 71  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  16829 gtgtaacgcccgtttcgaattatttaattgagtctagaag 16868  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 566
Target Start/End: Complemental strand, 5760794 - 5760659
Alignment:
Q  431 agacctaaggttacaactatttaggaaacaaaagacttgaacaagcttagcatggagaatctgataagctctctaaagagtcatgagataaagcttatag 530  Q
    ||||| |||| |||||||||| ||||| |||| || ||||| ||| | ||| |||| | ||| || |||||||| ||||||||||||||  |||||   |    
T  5760794 agaccaaaggctacaactattcaggaagcaaaggaattgaataaggtaagcttggaaagtctcattagctctctcaagagtcatgagattgagcttgatg 5760695  T
Q  531 gtgatgaaccaatgaagaaatctaagtctattgctc 566  Q
    | |||||||||   ||| ||| ||||||||||||||    
T  5760694 gagatgaaccagctaagcaatataagtctattgctc 5760659  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 27846676 - 27846704
Alignment:
Q  41 ccgtttcgaattatttaattgagtctaga 69  Q
    |||||||||||||||||||||||||||||    
T  27846676 ccgtttcgaattatttaattgagtctaga 27846704  T

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