View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17617_low_1 (Length: 939)
Name: NF17617_low_1
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17617_low_1 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 861; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 861; E-Value: 0
Query Start/End: Original strand, 15 - 939
Target Start/End: Complemental strand, 55175065 - 55174140
Alignment:
| Q |
15 |
ctgtgtcattctttcactctagatgtcagcttttattgaatataaacaagtcaacacttatttaagcaaagtacaaataaaaaagataatgttacttgag |
114 |
Q |
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| T |
55175065 |
ctgtgtcattctttcactctagatgtcagcttttattgaatataaacaagtcaacacttatttaagcaaagtacaaataaaaaagataatgttacttgag |
55174966 |
T |
|
| Q |
115 |
tttcggtgtttctttcccttacctgagcttcgagcatagatattttttccatgagctccgcattcttcttcctttccctttccaactcggctgaaatctg |
214 |
Q |
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| T |
55174965 |
tttcggtgtttctttcccttacctgagcttcgagcatagatattttttccatgagctccgcattcttcttcctttccctttccaactcggctgaaatctg |
55174866 |
T |
|
| Q |
215 |
agcaacattgttgacattatctccattcacttcttgttctatatcacaaaatgtagaggcattgaccaaggtagcacaggattgatgttctaccattgag |
314 |
Q |
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| T |
55174865 |
agaaacatcgttgacattatctccattcacttcttgttctatatcacaaaatgtagaggcattgaccaaggtagcacaggattgatgttctaccattgag |
55174766 |
T |
|
| Q |
315 |
gactaagcaattaattttatctgaaaatctctggttttggactggaaattaagtcaaatggaagataccctttaactttacacaatgttaacaacttcaa |
414 |
Q |
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| T |
55174765 |
gactaagcaattaattttatctgaaaatctctggttttggactggaaattaagtcaaatggaagataccctttaactctacacaatgttaacaacttcaa |
55174666 |
T |
|
| Q |
415 |
ctacttaaattgcttaagaactaatataatggtagcaaaagaatatggttaaggtattttaccaaagcatttatatattcctaactcttaactgttcann |
514 |
Q |
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| T |
55174665 |
atacttaaattgcttaagaactaatataatggtagcaaaagaataaggttaaggtattttaccaaaacatttatatattcctaacacttaactgttcatt |
55174566 |
T |
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| Q |
515 |
nnnnnggcttgagtaaagaaaaatcttaatgcagagaggcaaatgagagtgatctcaatgaaaggcaaagaaaagtcttggttttggattttgattaata |
614 |
Q |
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| T |
55174565 |
tttttggcttgagtaaagaaaaatcttaatgcagagaggcaaatgagagtgatctcaatgaaaggcaaagaaaagtcttggttttggattttgattaata |
55174466 |
T |
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| Q |
615 |
tcattgtttcagtttttgtaaatgaaaaatagaaagaaaacatgcattaacatatgcacgtgcgcttctctctcatattcattgtattccgggccatata |
714 |
Q |
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| T |
55174465 |
tcattgtttcagtttttgtgaatgaaaaatagaaagaaaacatgcattaacatatgcacgtgcgcttctctctcatattcattgtattccgggccatata |
55174366 |
T |
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| Q |
715 |
ctttttccattaacttgagaatttagataagtgaaattttcaagaggttgcattttcatgtgtatgaaattttattacaaccatgagattaatgaagttt |
814 |
Q |
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| T |
55174365 |
ctttttccattaacttgagaatttagataagtgaaattttcaagaggttgcattttcatgtgtatgaaattttattacaaccatgagattaatgaagttt |
55174266 |
T |
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| Q |
815 |
ttccatgcttgctgtcaatgacaactcaccaacatgttttattaacagttgcactgtcttgttatgaaagcctgagtgaggttgttaccttaattaacag |
914 |
Q |
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| T |
55174265 |
ttccatgcttgctgtcaatgacaactcaccaacatgttttattaacagttgcattgtcttgttatgaaagcctgagtgaggttgttaccttaattaacag |
55174166 |
T |
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| Q |
915 |
c-atatcataggagcatccgaggcac |
939 |
Q |
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| T |
55174165 |
caatatcataggagcatccgaggcac |
55174140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 94 - 221
Target Start/End: Complemental strand, 55178669 - 55178544
Alignment:
| Q |
94 |
aaaaagataatgttacttgagtttcggtgtttctttcccttacctgagcttcgagcatagatattttttccatgagctccgcattcttcttcctttccct |
193 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||| |
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| T |
55178669 |
aaaaagataatgttac--gagtttcggtgtttctttcccttatctgagcttcgtgcattgatattttttccatgagctccgcatttttcagcctttccct |
55178572 |
T |
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| Q |
194 |
ttccaactcggctgaaatctgagcaaca |
221 |
Q |
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| T |
55178571 |
ttccaactccaatgaaatctcagcaaca |
55178544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 50906856 - 50906734
Alignment:
| Q |
143 |
ttcgagcatagatattttttccatgagctccgcattcttcttcctttccctttccaactcggctgaaatctgagcaacattgttgac-attatctccatt |
241 |
Q |
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||||||||| ||||||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||| |||||||| |||||| |||||||||||| |
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| T |
50906856 |
ttcgagcatcgatattttt-ccatgatctccacattcttctgcctttccctttccaactcggctgaaatacgagcaacaacgttgacaattatctccatt |
50906758 |
T |
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| Q |
242 |
cacttcttgttctatatcacaaaa |
265 |
Q |
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| T |
50906757 |
cgcttcttattctatgtcacaaaa |
50906734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 50906959 - 50906872
Alignment:
| Q |
18 |
tgtcattctttcactctagatgtcagcttttattgaatat-aaacaagtcaacacttatttaagcaaagtacaaataaaaaagataat |
104 |
Q |
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| T |
50906959 |
tgtcattctttcactctagatgttagcttttgttgattataaaatgagtcaacacttatttaagtaaagtacgaataagaaagataat |
50906872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 50952849 - 50952792
Alignment:
| Q |
264 |
aatgtagaggcattgaccaa-ggtagcacaggattgatgttctaccattgaggactaa |
320 |
Q |
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| T |
50952849 |
aatgcagaggcattgaccaaaggtagcacatgattgatgttctaccattgaggactaa |
50952792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 423 - 474
Target Start/End: Complemental strand, 55178418 - 55178367
Alignment:
| Q |
423 |
attgcttaagaactaatataatggtagcaaaagaatatggttaaggtatttt |
474 |
Q |
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||||||||| |||||||||| ||||||||||||||| |||||||||||||| |
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| T |
55178418 |
attgcttaaaaactaatatatcggtagcaaaagaataaggttaaggtatttt |
55178367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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