View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17617_low_10 (Length: 322)
Name: NF17617_low_10
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17617_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 44124158 - 44123867
Alignment:
| Q |
13 |
aatatggtatagacaaaaaacattgatttcagattttggaggaatgaaaactagcaaaaatattttatggggaccaaaaccaaaaatcacttattttaca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44124158 |
aatatggtatagacaaaaaacattgatttcagattttggaggaatgaaaactagcgaaaatattttacggggaccaaaaccaaaaatcacttattttaca |
44124059 |
T |
|
| Q |
113 |
gaaccaaaaatatatttaaccttaatcactgtacaagatagaagaaataacactacagagaggaatcgtccagcttccacaaaggagaaaaaagagacac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44124058 |
gaaccaaaaatatatttaaccttaatcactgtacaagatagaagaaataacactacagagaggaatcgtccagcttccacaaaggagaaaaaagagacac |
44123959 |
T |
|
| Q |
213 |
ggcaattaacgattataagatactttattctaacaggaagatttagaaatacaattatgtagcaaattgtccagtttcctgtagagacaaac |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44123958 |
agcaattaacgattataagatactttattctaacaggaacatttagaaatacaattatgtagcaaattgtccagtttcctgtagagacaaac |
44123867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 19988487 - 19988560
Alignment:
| Q |
23 |
agacaaaaaacattgatttcagattttggaggaatgaaaactagcaaaaatattttatggggaccaaaaccaaa |
96 |
Q |
| |
|
|||||||||||| | ||||| ||||| ||||||||||||| | ||||||||||| ||| |||||||||||| |
|
|
| T |
19988487 |
agacaaaaaacaatactttcaaattttagaggaatgaaaaccaaagaaaatattttacgggaaccaaaaccaaa |
19988560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University