View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17617_low_11 (Length: 320)
Name: NF17617_low_11
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17617_low_11 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 29480390 - 29480079
Alignment:
| Q |
19 |
ggtccagggtacaatgatattttggtctttaaaacagcagtgat----------ttttaattgaaaattggaataaataatgaaagtaaatatgagaggg |
108 |
Q |
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| T |
29480390 |
ggtccagggtacaatgatattttggtttttaaaacagcagtgataacatattatttttaattgaaaattggaataaataatgaaagtaaatatgagaggg |
29480291 |
T |
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| Q |
109 |
agagattgatattaaaaaatgtacctcaactgcattttcagctggtccaaagtaaattgtttgacccccagaaagtagaaatagatcatcaaataatgca |
208 |
Q |
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| T |
29480290 |
agagattgatattaaaaaatgtacctcaactgcattttcagctggtccaaagtaaattgtttgacccccagaaagtagaaatagatcatcaaataatgca |
29480191 |
T |
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| Q |
209 |
aaaacctcactacttggttgatgaattgaagaaataacagttttcccatcatgagcaatgtttctcaaagtttgagcaacaaaatatgctgaggcactgt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29480190 |
aaaacctcactacttggttgatgaattgaagaaataacagttttcccatcatgagcaatgtttctcaaagtttgagcaacaaaatatgctgaggcactgt |
29480091 |
T |
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| Q |
309 |
ccaaaccacttg |
320 |
Q |
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| T |
29480090 |
ccaaaccacttg |
29480079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 191 - 318
Target Start/End: Complemental strand, 29465988 - 29465861
Alignment:
| Q |
191 |
agatcatcaaataatgcaaaaacctcactacttggttgatgaattgaagaaataacagttttcccatcatgagcaatgtttctcaaagtttgagcaacaa |
290 |
Q |
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| T |
29465988 |
agatcatcaaaaagtgcaaagacttcactgctaggctgatgaatagaagaaataacagtccttccatcacgagcaacatttctaagagtttggacaacaa |
29465889 |
T |
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| Q |
291 |
aatatgctgaggcactgtccaaaccact |
318 |
Q |
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| T |
29465888 |
aaaatgcagaagcactgtccaaaccact |
29465861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 306
Target Start/End: Complemental strand, 29433143 - 29433042
Alignment:
| Q |
205 |
tgcaaaaacctcactacttggttgatgaattgaagaaataacagttttcccatcatgagcaatgtttctcaaagtttgagcaacaaaatatgctgaggca |
304 |
Q |
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|||||| || |||||| | || ||||||||||||||||||||||| | |||||||||||||| ||||| | ||||||| |||||||| |||| || ||| |
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| T |
29433143 |
tgcaaatacttcactattgggctgatgaattgaagaaataacagtccttccatcatgagcaatatttctgagagtttgaacaacaaaaaatgcagaagca |
29433044 |
T |
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| Q |
305 |
ct |
306 |
Q |
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|| |
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| T |
29433043 |
ct |
29433042 |
T |
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