View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17617_low_12 (Length: 314)

Name: NF17617_low_12
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17617_low_12
NF17617_low_12
[»] chr1 (10 HSPs)
chr1 (23-308)||(48653437-48653722)
chr1 (45-279)||(48617762-48617996)
chr1 (49-269)||(11547574-11547794)
chr1 (69-290)||(48661897-48662118)
chr1 (170-274)||(48667587-48667691)
chr1 (154-295)||(48629286-48629427)
chr1 (69-272)||(48585690-48585893)
chr1 (69-272)||(48640263-48640466)
chr1 (55-218)||(48656917-48657080)
chr1 (59-119)||(48629203-48629263)
[»] chr3 (1 HSPs)
chr3 (47-290)||(19665107-19665350)
[»] chr8 (2 HSPs)
chr8 (48-260)||(27224312-27224524)
chr8 (47-290)||(27228514-27228757)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 23 - 308
Target Start/End: Original strand, 48653437 - 48653722
Alignment:
Q  23 gtgctatgtagccagtaatatctcctctaataggatcatcatcttctaaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48653437 gtgctatgtagccagtaatatctcctctaataggatcatcatcttctaaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaa 48653536  T
Q  123 tgatttttcaatgatgttgttaacagttcttatgtcttttccagctctttctgttgtcatgaaaatgacagaagcaccctttgcagcaacacactttgct 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48653537 tgatttttcaatgatgttgttaacagttcttatgtcttttccagctctttctgttgtgatgaaaatgacagaagcaccctttgcagcaacacactttgct 48653636  T
Q  223 agactaagcaaaggattaatgtgtccttgtgctggataagaaataaggaggacatgaatgggagcttccgatctcatattcttcga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48653637 agactaagcaaaggattaatgtgtccttgtgctggataagaaataaggaggacatgaatgggagcttccgatctcattttcttcga 48653722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 45 - 279
Target Start/End: Complemental strand, 48617996 - 48617762
Alignment:
Q  45 tcctctaataggatcatcatcttctaaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgtta 144  Q
    |||||||| ||||| |||||||||||||| |||||| |||||||||||||| || |||||||||||||||| ||||| ||||||||||||||| ||||||    
T  48617996 tcctctaagaggatgatcatcttctaaaccatcatctaagaactcaaaagtaagagaaccatcaccaattgaagtgagtgatttttcaatgatattgtta 48617897  T
Q  145 acagttcttatgtcttttccagctctttctgttgtcatgaaaatgacagaagcaccctttgcagcaacacactttgctagactaagcaaaggattaatgt 244  Q
    ||||||||||||||||| |||||| | |||||||| ||||| ||||||||||||||||||||||||| |||||||||||| ||||| | ||| || ||||    
T  48617896 acagttcttatgtctttgccagctttctctgttgtgatgaagatgacagaagcaccctttgcagcaagacactttgctagtctaagaagagggtttatgt 48617797  T
Q  245 gtccttgtgctggataagaaataaggaggacatga 279  Q
    ||||||||||||||||||| ||||| |||| ||||    
T  48617796 gtccttgtgctggataagagataagaaggatatga 48617762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 49 - 269
Target Start/End: Original strand, 11547574 - 11547794
Alignment:
Q  49 ctaataggatcatcatcttctaaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaacag 148  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||| ||||  |||| ||||||||||| |||||||||||| |    
T  11547574 ctaataggatcatcatcttgtaaaccatcatcaaagaactcaaaagtgagagaaccattacctattgatgtgactgatttttcaacgatgttgttaaccg 11547673  T
Q  149 ttcttatgtcttttccagctctttctgttgtcatgaaaatgacagaagcaccctttgcagcaacacactttgctagactaagcaaaggattaatgtgtcc 248  Q
    ||  ||||||||| |||||| | | |||||| ||||| ||||||||||||||||||||||||| |||||||||||  ||||| | ||| || ||||||||    
T  11547674 tttgtatgtctttgccagctttctttgttgtgatgaagatgacagaagcaccctttgcagcaagacactttgctaatctaagaagagggtttatgtgtcc 11547773  T
Q  249 ttgtgctggataagaaataag 269  Q
    |||| ||||| |||| |||||    
T  11547774 ttgtcctggaaaagagataag 11547794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 69 - 290
Target Start/End: Original strand, 48661897 - 48662118
Alignment:
Q  69 taaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaacagttcttatgtcttttccagct 168  Q
    ||||| || |||||||||||| ||| |||| ||||||||||| || |||||   | |||| |   |||||| || |||| |||  |||||||| ||||||    
T  48661897 taaactatgatcaaagaactcgaaaatgagagaaccatcacctatcggagttgctaatttgttggtgatgtcgtcaacaattcccatgtctttgccagct 48661996  T
Q  169 ctttctgttgtcatgaaaatgacagaagcaccctttgcagcaacacactttgctagactaagcaaaggattaatgtgtccttgtgctggataagaaataa 268  Q
     | ||||||||  ||||||||||||| ||||| |||||||||| ||||||| |||| ||||| | ||| || |||||||||||||||||| |||||| ||    
T  48661997 ttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcctagtctaagaagagggtttatgtgtccttgtgctggaaaagaaacaa 48662096  T
Q  269 ggaggacatgaatgggagcttc 290  Q
    |||||| |||||||||||||||    
T  48662097 ggaggatatgaatgggagcttc 48662118  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 274
Target Start/End: Original strand, 48667587 - 48667691
Alignment:
Q  170 tttctgttgtcatgaaaatgacagaagcaccctttgcagcaacacactttgctagactaagcaaaggattaatgtgtccttgtgctggataagaaataag 269  Q
    |||||||||| ||||| ||||||||||||||||||||||||| ||| ||  |||| ||||| | ||| || |||||||||||||||||| |||||| |||    
T  48667587 tttctgttgtgatgaagatgacagaagcaccctttgcagcaagacatttacctagtctaagaagagggtttatgtgtccttgtgctggaaaagaaacaag 48667686  T
Q  270 gagga 274  Q
    |||||    
T  48667687 gagga 48667691  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 295
Target Start/End: Original strand, 48629286 - 48629427
Alignment:
Q  154 atgtcttttccagctctttctgttgtcatgaaaatgacagaagcaccctttgcagcaacacactttgctagactaagcaaaggattaatgtgtccttgtg 253  Q
    |||||||| || ||| | ||||||||  | || |||||||| |||||||||||||||| ||| ||| |||| ||||| | ||| || |||||||||||||    
T  48629286 atgtctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcctagtctaagaagagggtttatgtgtccttgtg 48629385  T
Q  254 ctggataagaaataaggaggacatgaatgggagcttccgatc 295  Q
    ||||| |||||| ||| |||| ||||| |||| |||| ||||    
T  48629386 ctggaaaagaaacaagtaggatatgaaggggaacttcggatc 48629427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 272
Target Start/End: Original strand, 48585690 - 48585893
Alignment:
Q  69 taaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaacagttcttatgtcttttccagct 168  Q
    ||||| ||||||||||||||| |||| ||  | ||||||||||||||||||   | |||| ||||||||||||||| ||| ||  |||| ||| |||||     
T  48585690 taaaccatcatcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagcc 48585789  T
Q  169 ctttctgttgtcatgaaaatgacagaagcaccctttgcagcaacacactttgctagactaagcaaaggattaatgtgtccttgtgctggataagaaataa 268  Q
     | ||||||||  |||| || ||||  |||||||||||||||| | ||||| |||| | ||  | | | || |||||||||||||||||| |||| | ||    
T  48585790 gtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaa 48585889  T
Q  269 ggag 272  Q
    ||||    
T  48585890 ggag 48585893  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 272
Target Start/End: Original strand, 48640263 - 48640466
Alignment:
Q  69 taaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaacagttcttatgtcttttccagct 168  Q
    ||||| ||| ||||||||||| |||| ||  | ||||||||||||||||||   | |||| ||||||||||||||| ||| ||  |||| ||| |||||     
T  48640263 taaaccatcgtcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagcc 48640362  T
Q  169 ctttctgttgtcatgaaaatgacagaagcaccctttgcagcaacacactttgctagactaagcaaaggattaatgtgtccttgtgctggataagaaataa 268  Q
     | ||||||||  |||| || ||||  |||||||||||||||| | ||||| |||| | ||  | | | || |||||||||||||||||| |||| | ||    
T  48640363 gtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaa 48640462  T
Q  269 ggag 272  Q
    ||||    
T  48640463 ggag 48640466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 48656917 - 48657080
Alignment:
Q  55 ggatcatcatcttctaaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaacagttctta 154  Q
    |||||||| ||||  |||| ||| ||||| || |||||||||||  |||| | ||| |||||||||  || ||| | | | ||||||||| |||||   |    
T  48656917 ggatcatcgtctttcaaaccatcgtcaaataaatcaaaagtgaggaaacccttaccgattggagtggttgttttgttagttatgttgttagcagtttcca 48657016  T
Q  155 tgtcttttccagctctttctgttgtcatgaaaatgacagaagcaccctttgcagcaacacactt 218  Q
    ||||||| |||||| | |  |||||  |||| |||||||||| |||||||||||||| ||||||    
T  48657017 tgtctttgccagctttctgcgttgtggtgaagatgacagaagaaccctttgcagcaagacactt 48657080  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 48629203 - 48629263
Alignment:
Q  59 catcatcttctaaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagt 119  Q
    ||||||||  |||||||| |||||||||||| ||||||||  ||||||| || ||||||||    
T  48629203 catcatctagtaaacaatgatcaaagaactcgaaagtgaggcaaccatcgcctattggagt 48629263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 47 - 290
Target Start/End: Complemental strand, 19665350 - 19665107
Alignment:
Q  47 ctctaataggatcatcatcttctaaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaac 146  Q
    ||||||| ||||||||||||||||||| |||||||||||| |  ||| |||| ||||||||||| |||||||||| |||||| | | |||||||||||||    
T  19665350 ctctaatgggatcatcatcttctaaaccatcatcaaagaagtggaaaatgagagaaccatcacctattggagtgagtgatttgtgagtgatgttgttaac 19665251  T
Q  147 agttcttatgtcttttccagctctttctgttgtcatgaaaatgacagaagcaccctttgcagcaacacactttgctagactaagcaaaggattaatgtgt 246  Q
    ||||   |||||||| |||||| | ||||| || ||||| ||||| |||| |||||||||||||| |||||||||||| ||||| | ||| || ||||||    
T  19665250 agtttgcatgtctttgccagctttctctgtagtgatgaagatgactgaagaaccctttgcagcaagacactttgctagtctaagaagagggtttatgtgt 19665151  T
Q  247 ccttgtgctggataagaaataaggaggacatgaatgggagcttc 290  Q
    |||||||||||||| || ||||||||||  |||||||| |||||    
T  19665150 ccttgtgctggatatgagataaggaggatgtgaatgggtgcttc 19665107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 48 - 260
Target Start/End: Original strand, 27224312 - 27224524
Alignment:
Q  48 tctaataggatcatcatcttctaaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaaca 147  Q
    |||||| ||||||||||||  |||||  ||||||||||||| ||| ||||| ||||||| ||||| |||| ||| | |||||||| |||| |||||||||    
T  27224312 tctaatgggatcatcatctgataaaccgtcatcaaagaactgaaatgtgagagaaccattaccaactggaatgactaatttttcagtgatattgttaaca 27224411  T
Q  148 gttcttatgtcttttccagctctttctgttgtcatgaaaatgacagaagcaccctttgcagcaacacactttgctagactaagcaaaggattaatgtgtc 247  Q
    ||||| |  ||||| |||||| | |||||||| ||||| || ||||||| ||||||||  |||| ||||||| |||| ||||||| |||||| |||||||    
T  27224412 gttctcaattctttgccagctttctctgttgtgatgaagataacagaagaaccctttgatgcaagacactttcctagtctaagcataggatttatgtgtc 27224511  T
Q  248 cttgtgctggata 260  Q
    |||||||||||||    
T  27224512 cttgtgctggata 27224524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 47 - 290
Target Start/End: Original strand, 27228514 - 27228757
Alignment:
Q  47 ctctaataggatcatcatcttctaaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaac 146  Q
    ||||||| ||||||||||||  |||||  || ||||||||||| || | ||| ||||||| ||||| |||| ||| |||||| |||||||||||||||||    
T  27228514 ctctaatgggatcatcatctgataaaccgtcttcaaagaactcgaatgcgagagaaccattaccaactggaatgactgatttatcaatgatgttgttaac 27228613  T
Q  147 agttcttatgtcttttccagctctttctgttgtcatgaaaatgacagaagcaccctttgcagcaacacactttgctagactaagcaaaggattaatgtgt 246  Q
    |||||| |  ||| | |||||| | || ||||| ||||| || ||||||| ||||||||  |||| ||||||| |||  ||||||| |||||| ||||||    
T  27228614 agttctcaactctctgccagctttctcagttgtgatgaagataacagaagaaccctttgatgcaagacactttcctaatctaagcataggatttatgtgt 27228713  T
Q  247 ccttgtgctggataagaaataaggaggacatgaatgggagcttc 290  Q
    |||||||||||||| || | |||||| | ||  |||||||||||    
T  27228714 ccttgtgctggatatgatacaaggagaatattgatgggagcttc 27228757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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