View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17617_low_14 (Length: 308)
Name: NF17617_low_14
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17617_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 6887741 - 6887462
Alignment:
| Q |
17 |
aaattttatgttaattaacattatttttgttacnnnnnnnntgttaattaacattctgttacaagtttccgaatatccctcgttcctagaccctgaaaga |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
6887741 |
aaattttatgttaattaacattatttttgtta-aaaaaaaatgttaattaacattctgttgcatgtttccgaatatccctcgttcctagaccctgaaaga |
6887643 |
T |
|
| Q |
117 |
gagaagtaacaatagtagggagaataagaaagaggatgtctgcttcacgagatctggagcttctcattccagtgtcaaaaattcctgaaaatggaggctc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6887642 |
gagaagtaacaatagtagggagaataagaaagaggatgtctgcttcacgagatctggagcttctcattccagtgtcaaaaattcctgaaaatggaggctc |
6887543 |
T |
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| Q |
217 |
taaatcatcatcaacttcttcgtcaccgggtggaatggttctctccacccaacatcactccggccaggaggtaatgttcat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6887542 |
taaatcatcatcaacttcttcgtcaccgggtggaatggttctctccacccaacatcactccggccaggaggtaacgttcat |
6887462 |
T |
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