View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17617_low_15 (Length: 288)

Name: NF17617_low_15
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17617_low_15
NF17617_low_15
[»] chr7 (6 HSPs)
chr7 (11-273)||(4803562-4803824)
chr7 (157-237)||(37465274-37465354)
chr7 (157-237)||(6776848-6776928)
chr7 (157-235)||(37582510-37582588)
chr7 (157-235)||(37588805-37588883)
chr7 (181-234)||(49022130-49022183)
[»] chr1 (2 HSPs)
chr1 (203-273)||(23832804-23832874)
chr1 (79-146)||(30534049-30534116)
[»] chr3 (1 HSPs)
chr3 (181-234)||(37426059-37426112)
[»] chr8 (1 HSPs)
chr8 (49-154)||(29893902-29894007)
[»] chr2 (1 HSPs)
chr2 (55-154)||(38571246-38571346)
[»] chr4 (1 HSPs)
chr4 (89-146)||(44857139-44857196)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 4803824 - 4803562
Alignment:
Q  11 taattctacaggtaaaagttgcatagattatatagctatgtgaatataaattgtgtaattatgtccgcatagctctgtaatttgcttatgattttttagc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803824 taattctacaggtaaaagttgcatagattatatagctatgtgaatataaattgtgtaattatgtccgcatagctctgtaatttgcttatgattttttagc 4803725  T
Q  111 ttttgcaagttctgttaagaactaggatcattaaaagattttttctagctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaacc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4803724 ttttgcaagttctgttaagaactaggatcattaaaagattttttctagctccaactcatgagaaagttgaaagtgtaggagcattatcatgcaccaaacc 4803625  T
Q  211 agttcactaatgttgctatgcttcctgtaggttatttaacttcatctggtttagtagtaattg 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803624 agttcactaatgttgctatgcttcctgtaggttatttaacttcatctggtttagtagtaattg 4803562  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 37465354 - 37465274
Alignment:
Q  157 agctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttcctg 237  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37465354 agctccaactcatgagaaagttgaaagtataggagcataaccatgcaccaaaccagttcactaatgttgctatgcttcctg 37465274  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 6776848 - 6776928
Alignment:
Q  157 agctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttcctg 237  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  6776848 agctccaactcatgagaaagttgaaagtataggagcataaccatgcaccaaaccagttcactattgttgctatgcttcctg 6776928  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 37582510 - 37582588
Alignment:
Q  157 agctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttcc 235  Q
    ||||||||| |||||||||||||||||| ||||||||||  |||||||||||||||||||||||||| |||||||||||    
T  37582510 agctccaacccatgagaaagttgaaagtataggagcatagccatgcaccaaaccagttcactaatgtggctatgcttcc 37582588  T

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Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 37588805 - 37588883
Alignment:
Q  157 agctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttcc 235  Q
    ||||||||| |||||||||||||||||| ||||||||||  |||||||||||||||||||||||||| ||||| |||||    
T  37588805 agctccaacccatgagaaagttgaaagtataggagcatagccatgcaccaaaccagttcactaatgtggctatacttcc 37588883  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 49022183 - 49022130
Alignment:
Q  181 aagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttc 234  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  49022183 aagtataggaacataaccatgcaccaaaccagttcactaatgttgctatgcttc 49022130  T

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Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 23832874 - 23832804
Alignment:
Q  203 accaaaccagttcactaatgttgctatgcttcctgtaggttatttaacttcatctggtttagtagtaattg 273  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23832874 accaaaccggttcactaatgttgctatgcttcctgtaggttatttaacttcatctggtttagtagtaattg 23832804  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 30534049 - 30534116
Alignment:
Q  79 atagctctgtaatttgcttatgattttttagcttttgcaagttctgttaagaactaggatcattaaaa 146  Q
    ||||||||| |||||| ||||| || |||||||| |||||||||| ||| | | ||||||||||||||    
T  30534049 atagctctgcaatttgattatgtttatttagcttgtgcaagttctattaggtattaggatcattaaaa 30534116  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 37426059 - 37426112
Alignment:
Q  181 aagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttc 234  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  37426059 aagtataggaacataaccatgcaccaaaccagttcactaatgttgctatgcttc 37426112  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 29894007 - 29893902
Alignment:
Q  49 tgtgaatataaattgtgtaattatgtccgcatagctctgtaatttgcttatgattttttagcttttgcaagttctgttaagaactaggatcattaaaaga 148  Q
    ||||| |||||| ||||||||||||| |  |||||| || ||| || | ||| ||||||| ||| ||||||||| ||||  || ||||||||||||||||    
T  29894007 tgtgattataaactgtgtaattatgtgcatatagctatgcaatctgatcatgtttttttaacttgtgcaagttcggttagtaattaggatcattaaaaga 29893908  T
Q  149 tttttt 154  Q
    ||||||    
T  29893907 tttttt 29893902  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 38571246 - 38571346
Alignment:
Q  55 tataaattgtgtaattatgtccgcatagctctgtaatttgcttatgatttt-ttagcttttgcaagttctgttaagaactaggatcattaaaagattttt 153  Q
    |||||| ||||||||||||| |  ||| || || |||||| ||||| |||| ||||||| ||||||||| ||||  || |||||||||||||||||||||    
T  38571246 tataaactgtgtaattatgtgcatataactatgcaatttgattatgttttttttagcttgtgcaagttcggttagtaattaggatcattaaaagattttt 38571345  T
Q  154 t 154  Q
    |    
T  38571346 t 38571346  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 44857196 - 44857139
Alignment:
Q  89 aatttgcttatgattttttagcttttgcaagttctgttaagaactaggatcattaaaa 146  Q
    |||||| ||||| || |||||||| ||||||||| |||| ||| ||||||||||||||    
T  44857196 aatttgattatgtttatttagcttgtgcaagttcggttaggaattaggatcattaaaa 44857139  T

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