View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17617_low_16 (Length: 263)
Name: NF17617_low_16
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17617_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 1622974 - 1623118
Alignment:
| Q |
95 |
ctctcaaagtgtacaaaagaatatgagcatgctcttacaataattacaatgaacttaattacaaagaattaagtacaataacggaggtagtaaagaaata |
194 |
Q |
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| T |
1622974 |
ctctcaaagtgtacaaaagaatatgagcatgctcttacaataattacaatgaacttaattacaaagaattaagtacaataacggaggtagtaaagaaata |
1623073 |
T |
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| Q |
195 |
gctatagcacaacataaatgatcaaagaccagatgtaaatggcac |
239 |
Q |
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| T |
1623074 |
gctatagcacaacataaatgatcaaagaccagatgtaaatggcac |
1623118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 102 - 245
Target Start/End: Original strand, 1605859 - 1606002
Alignment:
| Q |
102 |
agtgtacaaaagaatatgagcatgctcttacaataattacaatgaacttaattacaaagaattaagtacaataacggaggtagtaaagaaatagctatag |
201 |
Q |
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| T |
1605859 |
agtgtacaaaagaatatgagcatgctcttacaagaattacaatgaacttaattacaaagaattaagtacaataactgaggcaatgaagaaatagctatag |
1605958 |
T |
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| Q |
202 |
cacaacataaatgatcaaagaccagatgtaaatggcacaatagt |
245 |
Q |
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| T |
1605959 |
cacaacataaatgatcaaagaccagatgtaaatggcacagtagt |
1606002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 1629247 - 1629300
Alignment:
| Q |
192 |
atagctatagcacaacataaatgatcaaagaccagatgtaaatggcacaatagt |
245 |
Q |
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| T |
1629247 |
atagctataccaaaatacaaatgatcaaagaccagatgtaaatggcacagtagt |
1629300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1622880 - 1622912
Alignment:
| Q |
1 |
ctcctctcaaactcaatgtatgattgtacaacg |
33 |
Q |
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| T |
1622880 |
ctcctctcaaactcaatgtatgattgtacaacg |
1622912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 245
Target Start/End: Complemental strand, 10821433 - 10821398
Alignment:
| Q |
210 |
aaatgatcaaagaccagatgtaaatggcacaatagt |
245 |
Q |
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| T |
10821433 |
aaatgatcaaagaccagatgtaaatggcacagtagt |
10821398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 104 - 245
Target Start/End: Original strand, 18780677 - 18780818
Alignment:
| Q |
104 |
tgtacaaaagaatatgagcatgctcttacaataattacaatgaacttaattacaaagaattaagtacaataacggaggtagtaaagaaatagctatagca |
203 |
Q |
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| T |
18780677 |
tgtacaaaagaatatgggtatgctcttacaagaattacaatgaatttaattacaaagaattaagtacaataattgaagcaatgaagaaatagctatagca |
18780776 |
T |
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| Q |
204 |
caacataaatgatcaaagaccagatgtaaatggcacaatagt |
245 |
Q |
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| T |
18780777 |
caacataaaagatcaaagaccagatgtaaatggcacagtagt |
18780818 |
T |
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