View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17617_low_17 (Length: 252)
Name: NF17617_low_17
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17617_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 5031165 - 5031400
Alignment:
| Q |
1 |
atgaaagtgaacatgaattaaactttgtattataaatttaataatttaaaattgaacataatttgaatatatgcagtactgtcaccaaaaaacggcttgt |
100 |
Q |
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| T |
5031165 |
atgaaagtgaacataaattaaactttgtattataaatttaatagtttaaaattgaacataatttgaatatatgcagtactgtcaccaaaaaacggcttgt |
5031264 |
T |
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| Q |
101 |
gtacgaccttaaagcaagcaatataatgcttgacaagaattataatgcaagtttaggtgatttgggatcagcatatgcagtagagaatgaaaaaacatcc |
200 |
Q |
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| T |
5031265 |
gtacgaccttaaagcaagcaatataatgcttgacaagaattataatgcaagtttaggtgatttgggatcagcatatgcagtagagaatgaaaaaacatcc |
5031364 |
T |
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| Q |
201 |
tatgaggagtacaaggtacaatgggatacatcatac |
236 |
Q |
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| T |
5031365 |
tatgagttgtacgaggtacaatgggatacatcatac |
5031400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 10128627 - 10128491
Alignment:
| Q |
105 |
gaccttaaagcaagcaatataatgcttgacaagaattataatgcaagtttaggtgatttgggatcagcatatgcagtagagaatgaaaaaacatcctatg |
204 |
Q |
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| T |
10128627 |
gacctgaaagcaagcaacataatgctagacgttgatttcaatgcacgtttaggtgatttcggcttagcacgtgcactagagaatgaaaaaacatcgtatg |
10128528 |
T |
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| Q |
205 |
----------aggagtacaaggtacaatgggatacat |
231 |
Q |
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| T |
10128527 |
cagaattagaaggagtacaaggtacaatgggatacat |
10128491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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