View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17617_low_2 (Length: 746)

Name: NF17617_low_2
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17617_low_2
NF17617_low_2
[»] chr1 (2 HSPs)
chr1 (91-730)||(37615632-37616267)
chr1 (14-89)||(37616319-37616394)


Alignment Details
Target: chr1 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 91 - 730
Target Start/End: Complemental strand, 37616267 - 37615632
Alignment:
Q  91 atagcattcctttatttcatccatactatttggatcctgtgaatatctgcttttatctccctataactttctatgatagactcaaaagttaagatttgtt 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37616267 atagcattcctttatttcatccatactatttggatcctgtgaatatctgcttttatctccctataactttctatgatagactcaaaagttaagatttgtt 37616168  T
Q  191 gaatcacatgttctccatttacattattgttttaattttgttttttgtggatcggtagacctggcttgcataataatttgtcttacttctataccatggt 290  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37616167 gaatcacatgttctccatttacattatttttttaattttgttttttgtggatcggtagacctggcttgcataataatttgtcttacttctataacatggt 37616068  T
Q  291 ggaaactggaaatcatgtatttcctaggcttgttacgatatctgtaactttttatttatctcctcttgactctccaatcaagtttatcttatacattgat 390  Q
    |||||       |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37616067 ggaaa-------tcatgtatttcctaggcttgttaccatatctctaactttttatttatctcctcttgactctccaatcaagtttatcttatagattgat 37615975  T
Q  391 caaaagagtagtttgaaagcatctttgtctatcttgtcaacgtgatgcacaatatttgaaaatgagtctgtcaatgaaattgccataccacacacaacta 490  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37615974 caaaagagtagttcgaaagtatctttgtctatcttgtcaacgtgatgcacaatatttgaaaatgagtctgtcaatgaaattgccataccacacacaacta 37615875  T
Q  491 ctagttttctagcatttactcatgttagggacattttattaatgatattgttgagcaatacttaatgttgacatgatga---caagcaatgttttgaata 587  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  37615874 ctagttttctagcatttactcatgttagggacattttattaatgatattgttgagcaatacttaatgttgacatgatgacgtcaagcaatgttttgaata 37615775  T
Q  588 gtattttgcttcacatttgtggctagaatgttaaggcttacgaggccttaacaactacttttgttactgtaaaagtacagatcgagtaaattgatatatc 687  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37615774 gtattttgcttcacatttgtggctagaatgttaaggcttacgaggccttaacaactacttttgttactgtaaaagtacagatcgagtaaattgatatatc 37615675  T
Q  688 cttgcctttcaaatttactaaactatgatgtagtattgtctct 730  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37615674 cttgcctttcaaatttactaaactatgatgtagtattgtctct 37615632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 37616394 - 37616319
Alignment:
Q  14 tactcaatatttaatgtacgtttcgtatcacggtgagtatatcagaatcaccgcgatccattgtgattttgcaaaa 89  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||||||||||    
T  37616394 tacttaatatttaatgtacgtttaatatcacggtgagtatatcagaatcaccgcgatccatcgtaattttgcaaaa 37616319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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