View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17617_low_5 (Length: 500)
Name: NF17617_low_5
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17617_low_5 |
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| [»] scaffold2084 (1 HSPs) |
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| [»] scaffold0971 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 40550756 - 40551239
Alignment:
| Q |
1 |
taacaatatagatcactgaatagccaagctcacaagccagttccgatgaaaatcagacagaattttgattacnnnnnnnnnnacaaaagtcacctcatat |
100 |
Q |
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| T |
40550756 |
taacaatatagatcactgaatagccaagttcacgagccagttccgatgaaaatcagacagaattttgattacttttttttt-acaaaagtcacctcatat |
40550854 |
T |
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| Q |
101 |
tgttaattaataataatttgttagatgaatatcagaatatcaatgagctaaagaagaagctacccttgattacctatatgcattttactctcaataatta |
200 |
Q |
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| T |
40550855 |
tgttaattaataataatttgttagatgaatatcagaatatcaatgagctaaagaagaagctacccttgattacctatatgcattttactctcaataatta |
40550954 |
T |
|
| Q |
201 |
gagcaaacagttagcccagcaaacaaaataaattcaagacacttccatcagcctcaatataacctccaaactaaacaaagctatatcatggtcaggtgtt |
300 |
Q |
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| T |
40550955 |
gagcaaacagttagcccagcaaacaaaataaattcaagacacttccatcagcctcaatataacctccaaactaaacaaagctatatcatggtcaggtgtt |
40551054 |
T |
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| Q |
301 |
aggacaattgtctggtcactcatcatctgaataacatgctaaattcggaaatgcagcttgatgcgacgaggtagccaccatgttactgctattgggccca |
400 |
Q |
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| T |
40551055 |
aggacaattgtctggtcactcatcatctgaataacatgctaaattcggaaatgcagcttgatgcgacgaggtagccaccatgttactgcaattaggccca |
40551154 |
T |
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| Q |
401 |
aattcggataagttagcaggagccacatctgacaaacgggaaataacgttcggggatgttatagtagattgattgctaacattcc |
485 |
Q |
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| T |
40551155 |
aatccgaataagttagcaggagccacatctgacaaacgggaaataacgttcggggatgttatagtagattgattgctaacattcc |
40551239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 312 - 485
Target Start/End: Original strand, 40568288 - 40568461
Alignment:
| Q |
312 |
ctggtcactcatcatctgaataacatgctaaattcggaaatgcagcttgatgcgacgaggtagccaccatgttactgctattgggcccaaattcggataa |
411 |
Q |
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| T |
40568288 |
ctggtcactcgtcatctgataaacatactaaattctgagatgcagcttgatgtgacgagttggccaccacactactgctattgggcccagatctggataa |
40568387 |
T |
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| Q |
412 |
gttagcaggagccacatctgacaaacgggaaataacgttcggggatgttatagtagattgattgctaacattcc |
485 |
Q |
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| T |
40568388 |
gttagccggagccacatctgacaaacgtgaaataatatttgggggcgttttagtagattgactgctaaaattcc |
40568461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 103 - 241
Target Start/End: Original strand, 40568143 - 40568282
Alignment:
| Q |
103 |
ttaattaat-aataatttgttagatgaatatcagaatatcaatgagct-aaagaagaagctacccttgattacctatatgcattttactctcaataatta |
200 |
Q |
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| T |
40568143 |
ttaattaattaataatttgatagataaatatcggaatatcaatgagcttaaagatgaagctgcc-ttgattacctatatacattttactatcaataatta |
40568241 |
T |
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| Q |
201 |
ga-gcaaacagttagcccagcaaacaaaataaattcaagaca |
241 |
Q |
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| T |
40568242 |
aatgcaaacagttagcccagtaaa-aataaaaattcaagaca |
40568282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2084 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold2084
Description:
Target: scaffold2084; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 308 - 485
Target Start/End: Complemental strand, 810 - 633
Alignment:
| Q |
308 |
ttgtctggtcactcatcatctgaataacatgctaaattcggaaatgcagcttgatgcgacgaggtagccaccatgttactgctattgggcccaaattcgg |
407 |
Q |
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| T |
810 |
ttgtctggtaactcatcatccgataaacatactaaattcggagatgcagctagatgcgacaagttagccactacgttactgctattggatccaaatctgg |
711 |
T |
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| Q |
408 |
ataagttagcaggagccacatctgacaaacgggaaataacgttcggggatgttatagtagattgattgctaacattcc |
485 |
Q |
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| T |
710 |
ataagttattgggagccacatccgacaaacgtgaaataacattcggtggtgttaaagtagattgactgctaacattcc |
633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0971 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0971
Description:
Target: scaffold0971; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 483
Target Start/End: Original strand, 2416 - 2581
Alignment:
| Q |
318 |
actcatcatctgaataacatgctaaattcggaaatgcagcttgatgcgacgaggtagccaccatgttactgctattgggcccaaattcggataagttagc |
417 |
Q |
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| T |
2416 |
actcatcatcagataaacatactaaattcggagatgcatctagatgcgataacttagccactacgttactgctattggtccgaaatctggataacttatt |
2515 |
T |
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| Q |
418 |
aggagccacatctgacaaacgggaaataacgttcggggatgttatagtagattgattgctaacatt |
483 |
Q |
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| T |
2516 |
gggagacacatcggacaaatgtgaaataacattcagtcatgttaaagtagattgaatgcaaacatt |
2581 |
T |
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