View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17617_low_6 (Length: 437)
Name: NF17617_low_6
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17617_low_6 |
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| [»] chr1 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 127 - 437
Target Start/End: Original strand, 31213814 - 31214123
Alignment:
| Q |
127 |
gtcatttccatctccttcaaagattttaacatatttacaagtgccttgcttttgaacctttattctctcagagatcatactcacaacttgctctttttca |
226 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31213814 |
gtcatttccatctccttcaaagattttaacatatt-acaagtgccttgcttttgaacctttattctctcagagatcatcctcacaacttgctctttttca |
31213912 |
T |
|
| Q |
227 |
acaatcttggtttccctaaggttgacttcagctttcctatactctaaggcttcctcctgcctcctaaacttcttaatgagggatttccgcttttgttcca |
326 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31213913 |
acaaccttggtttccctaaggttgacttcagcttccctatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttcca |
31214012 |
T |
|
| Q |
327 |
tttcaagctcaaaatacnnnnnnnnctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaaga |
426 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31214013 |
tttcaagctcaaaatacatttttttctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaaga |
31214112 |
T |
|
| Q |
427 |
atccactttct |
437 |
Q |
| |
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||||||||||| |
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| T |
31214113 |
atccactttct |
31214123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 127 - 437
Target Start/End: Original strand, 31219569 - 31219878
Alignment:
| Q |
127 |
gtcatttccatctccttcaaagattttaacatatttacaagtgccttgcttttgaacctttattctctcagagatcatactcacaacttgctctttttca |
226 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31219569 |
gtcatttccatctccttcaaagattttaacatatt-acaagtgccttgcttttgaacctttattctctcagagatcatcctcacaacttgctctttttca |
31219667 |
T |
|
| Q |
227 |
acaatcttggtttccctaaggttgacttcagctttcctatactctaaggcttcctcctgcctcctaaacttcttaatgagggatttccgcttttgttcca |
326 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31219668 |
acaaccttggtttccctaaggttgacttcagcttccctatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttcca |
31219767 |
T |
|
| Q |
327 |
tttcaagctcaaaatacnnnnnnnnctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaaga |
426 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31219768 |
tttcaagctcaaaatacatttttttctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaaga |
31219867 |
T |
|
| Q |
427 |
atccactttct |
437 |
Q |
| |
|
||||||||||| |
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| T |
31219868 |
atccactttct |
31219878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 31213741 - 31213800
Alignment:
| Q |
138 |
ctccttcaaagattttaacatatttacaagtgccttgcttttgaacctttattctctcaga |
198 |
Q |
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||||||||||||||| || ||||| ||||| |||| ||||||||||||||||||||||| |
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| T |
31213741 |
ctccttcaaagatttcaaattattttcaagtccctta-ttttgaacctttattctctcaga |
31213800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 31219496 - 31219555
Alignment:
| Q |
138 |
ctccttcaaagattttaacatatttacaagtgccttgcttttgaacctttattctctcaga |
198 |
Q |
| |
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||||||||||||||| || ||||| ||||| |||| ||||||||||||||||||||||| |
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| T |
31219496 |
ctccttcaaagatttcaaattattttcaagtccctta-ttttgaacctttattctctcaga |
31219555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 138 - 437
Target Start/End: Complemental strand, 47895723 - 47895423
Alignment:
| Q |
138 |
ctccttcaaagattttaacatatttacaagtgccttgcttttgaacctttattctctcagagatcatactcacaacttgctctttttcaacaatcttggt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47895723 |
ctccttcaaagattttaacatatttacaagtgccttgcttttgaaccttcattctctcagagatcatactcacaacttgctctttttcaacaatcttggt |
47895624 |
T |
|
| Q |
238 |
ttccctaaggttgacttcagctttcctatactctaaggcttcctcctgcctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctca |
337 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47895623 |
ttccctaaggttgacttcagctttcctatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctca |
47895524 |
T |
|
| Q |
338 |
aaatac-nnnnnnnnctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttc |
436 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47895523 |
aaatacttttttttcctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttc |
47895424 |
T |
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| Q |
437 |
t |
437 |
Q |
| |
|
| |
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|
| T |
47895423 |
t |
47895423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 183 - 339
Target Start/End: Original strand, 4960014 - 4960170
Alignment:
| Q |
183 |
cctttattctctcagagatcatactcacaacttgctctttttcaacaatcttggtttccctaaggttgacttcagctttcctatactctaaggcttcctc |
282 |
Q |
| |
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|||||||||||||||| || |||||| | ||||||||| || ||| ||| ||||||||| |||||||||| || ||||||||| ||||||||||| |
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| T |
4960014 |
cctttattctctcagacttcgtactcaaagcttgctcttcttttccaaccttcgtttccctatggttgacttcgatttccctatactccaaggcttcctc |
4960113 |
T |
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| Q |
283 |
ctgcctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaa |
339 |
Q |
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|| || ||||||| || | ||||||||||||||||||||||||||||||||||| |
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| T |
4960114 |
cttgctgctaaactcctcagctagggatttccgcttttgttccatttcaagctcaaa |
4960170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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