View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17617_low_7 (Length: 415)

Name: NF17617_low_7
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17617_low_7
NF17617_low_7
[»] chr8 (5 HSPs)
chr8 (1-397)||(1174768-1175170)
chr8 (5-168)||(30634286-30634449)
chr8 (153-255)||(35673506-35673607)
chr8 (1-58)||(1173508-1173565)
chr8 (172-219)||(10885470-10885517)
[»] chr4 (8 HSPs)
chr4 (80-397)||(11809896-11810201)
chr4 (21-120)||(4847761-4847860)
chr4 (153-219)||(18807581-18807647)
chr4 (37-146)||(25054251-25054358)
chr4 (132-232)||(25054141-25054240)
chr4 (44-123)||(28395653-28395731)
chr4 (174-207)||(52520504-52520537)
chr4 (165-223)||(31337748-31337806)
[»] chr5 (11 HSPs)
chr5 (1-171)||(25725861-25726031)
chr5 (1-169)||(40382810-40382978)
chr5 (1-218)||(25502078-25502295)
chr5 (1-150)||(10410708-10410855)
chr5 (44-150)||(10412281-10412385)
chr5 (5-123)||(25506995-25507113)
chr5 (153-219)||(4895927-4895992)
chr5 (158-218)||(33689805-33689863)
chr5 (132-219)||(10412189-10412274)
chr5 (153-207)||(21637363-21637417)
chr5 (1-52)||(8081508-8081559)
[»] chr2 (8 HSPs)
chr2 (1-220)||(45034995-45035212)
chr2 (1-169)||(45033250-45033417)
chr2 (1-105)||(33187226-33187330)
chr2 (1-123)||(1015657-1015778)
chr2 (1-218)||(17308534-17308744)
chr2 (77-123)||(4399574-4399620)
chr2 (23-123)||(30191518-30191615)
chr2 (156-219)||(25306663-25306724)
[»] chr1 (6 HSPs)
chr1 (1-169)||(44782236-44782406)
chr1 (1-169)||(46679590-46679759)
chr1 (159-219)||(3284438-3284497)
chr1 (159-219)||(9311965-9312024)
chr1 (94-150)||(9217542-9217597)
chr1 (157-201)||(35891592-35891636)
[»] chr6 (9 HSPs)
chr6 (5-123)||(34350391-34350509)
chr6 (44-123)||(24544664-24544742)
chr6 (159-218)||(15868329-15868387)
chr6 (159-218)||(33869183-33869241)
chr6 (159-219)||(14620447-14620506)
chr6 (174-207)||(5378635-5378668)
chr6 (174-207)||(19645593-19645626)
chr6 (57-105)||(15688987-15689035)
chr6 (89-117)||(31528826-31528854)
[»] chr3 (8 HSPs)
chr3 (1-123)||(28133655-28133777)
chr3 (44-151)||(4602202-4602307)
chr3 (1-170)||(27682083-27682248)
chr3 (37-216)||(4608938-4609126)
chr3 (153-213)||(9032934-9032994)
chr3 (5-49)||(41874519-41874563)
chr3 (153-218)||(26667217-26667279)
chr3 (44-123)||(27972530-27972605)
[»] chr7 (9 HSPs)
chr7 (1-170)||(29924536-29924687)
chr7 (154-218)||(21631450-21631513)
chr7 (91-150)||(964997-965055)
chr7 (153-207)||(9878366-9878420)
chr7 (57-123)||(21464441-21464507)
chr7 (174-207)||(28124883-28124916)
chr7 (174-207)||(4895487-4895520)
chr7 (85-114)||(25471922-25471951)
chr7 (165-228)||(44963049-44963110)
[»] scaffold0251 (1 HSPs)
scaffold0251 (159-219)||(6162-6221)
[»] scaffold0570 (1 HSPs)
scaffold0570 (25-105)||(3010-3094)
[»] scaffold0060 (1 HSPs)
scaffold0060 (153-367)||(9187-9387)
[»] scaffold0245 (1 HSPs)
scaffold0245 (158-219)||(11035-11095)


Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 1175170 - 1174768
Alignment:
Q  1 attgtgtaattctttccaggagtcatta---ccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagt 97  Q
    ||||||||||| |||| |||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1175170 attgtgtaattttttctaggagtcattattaccaagaaacaattgtataaaagataatgaaatagtacataggtgtaacttatttatagtgacttggagt 1175071  T
Q  98 aactaactccctaactaactttctacatagataacttgctctccaagttatcttcttcactatactctaatagtccccctcaaactcaaaatggggaaat 197  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||    
T  1175070 aactaactccccacctaactttctacatagataacttgctctccaagttatcttcttcactatactctaatagtcctcctcaaactcaaaatggaaaaat 1174971  T
Q  198 tcaccaattttgagtttgaaatgcaaagaatattctagtttattctcactatattgtaggcaaagtaaactaaagagtaaacaaagtaaaac---caaaa 294  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    ||||    
T  1174970 tcaccaattttgagtttgaaatacaaagaatattctagtttattctcactatattgtaggcaaagtaaactaaagagtaaactaagtaaaacaaaaaaaa 1174871  T
Q  295 actgataggaaaagaggtaacacatgcccaatgcaaaacacagatccttccatagcccatgcccaatagagaatcccaattcagcttctgaatgtcttct 394  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1174870 actgatagaaaaagaggtaacacatgcccaatgcaaaacacagatccttccatagcccatgcccaatagagaatcccaattcagcttctgaatgtcttct 1174771  T
Q  395 tct 397  Q
    |||    
T  1174770 tct 1174768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 30634286 - 30634449
Alignment:
Q  5 tgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaactaac 104  Q
    ||||||||| || | |||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  30634286 tgtaattctctctatgagtcattactaagaaacaattgtataaaagataatgaaatagtacataggtgtagcttatttatagtgacttggagtaactaac 30634385  T
Q  105 tccctaactaactttctacatagataacttgctctccaagttatcttcttcactatactctaat 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30634386 tccctaactaactttctacatagataacttgctctccaagttatcttcttcactatactctaat 30634449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 35673506 - 35673607
Alignment:
Q  153 ttcactatactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaatgcaaaga-atattctagtttattctcactatat 251  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| || | || | | ||||||||||||||||    
T  35673506 ttcactatactctattagtccccctcaaactcaaaatggggaaatttaccaa-tttgagtttgaaatgcaaggacacatac-aatttattctcactatat 35673603  T
Q  252 tgta 255  Q
    ||||    
T  35673604 tgta 35673607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1173565 - 1173508
Alignment:
Q  1 attgtgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaa 58  Q
    ||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  1173565 attgtataattctctctaggagtcattaccaagaaacaattgtataaaagataatgaa 1173508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 10885517 - 10885470
Alignment:
Q  172 ccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaat 219  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  10885517 ccccctcaaactcaaagtggggaaattcaccaattttgagtttgaaat 10885470  T

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Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 80 - 397
Target Start/End: Original strand, 11809896 - 11810201
Alignment:
Q  80 tttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctctccaagttatcttcttcactatactctaatagtccccctca 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11809896 tttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctctccaagttatcttcttcactatactctaatagtccccctca 11809995  T
Q  180 aactcaaaatggggaaattcaccaattttgagtttgaaatgcaaagaatattctagtttattctcactatattgtaggcaaagtaaactaaagagtaaac 279  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||               
T  11809996 aacttaaaatggggaaattcaccaattttgagtttgaaatacaaagaatattctagtttattctcactatattgtaggcaaagtaaact----------- 11810084  T
Q  280 aaagtaaaaccaaaaactgataggaaaagaggtaacacatgcccaatgcaaaacacagatccttccatagcccatgcccaatagagaatcccaattcagc 379  Q
     ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  11810085 -aagtaaaacaaaaaactgataggaaaagaggtaacacatgcctaatgcaaaacacagatccttccattgcccaggcccaatagagaatcccaattcagc 11810183  T
Q  380 ttctgaatgtcttcttct 397  Q
    ||||||||||||||||||    
T  11810184 ttctgaatgtcttcttct 11810201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 4847761 - 4847860
Alignment:
Q  21 agtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaactaactccctaactaactttc 120  Q
    |||||||||||||||||||||||||| |||||| ||| |||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4847761 agtcattaccaagaaacaattgtatataagatagtgatatagtacatagatgtagcttatttatagtgacttggagtaactaactccctaactaactttc 4847860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 18807581 - 18807647
Alignment:
Q  153 ttcactatactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaat 219  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18807581 ttcactatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaat 18807647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 25054358 - 25054251
Alignment:
Q  37 caattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaactaactccctaactaactttctacatagataacttgc 136  Q
    |||||| |||||||||  |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| ||  | ||||||    
T  25054358 caattgaataaaagatg-tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaacgttctac-tatgttacttgc 25054261  T
Q  137 tctccaagtt 146  Q
    ||||||||||    
T  25054260 tctccaagtt 25054251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 232
Target Start/End: Complemental strand, 25054240 - 25054141
Alignment:
Q  132 cttgctctccaagttatcttcttcactatactctaatagtccccctcaaactcaaaa-tggggaaattcaccaattttgagtttgaaatgcaaagaatat 230  Q
    ||||| || ||||||| ||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| ||| || |||    
T  25054240 cttgcacttcaagttaccttct-cactatactctaatagtccccctcgaactcaaaattggggaaattcaccaa-tttgagtttgaaatacaatgattat 25054143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 28395653 - 28395731
Alignment:
Q  44 ataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaactaactccctaactaactttctac 123  Q
    |||||||||| |||||||||| |  |||||| |||||||||||||| ||||||||| ||||||||||||||| |||||||    
T  28395653 ataaaagata-tgaaatagtacagtggtgtagcttatttatagtgatttggagtaaataactccctaactaattttctac 28395731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 52520537 - 52520504
Alignment:
Q  174 ccctcaaactcaaaatggggaaattcaccaattt 207  Q
    ||||||||||||||||||||||||||||||||||    
T  52520537 ccctcaaactcaaaatggggaaattcaccaattt 52520504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 31337806 - 31337748
Alignment:
Q  165 taatagtc-cccctcaaactcaaaatggggaaattcaccaattttgagtttgaaatgcaa 223  Q
    |||||||| ||||||||||||||| ||| |||||||||||| ||| ||||||||||||||    
T  31337806 taatagtcacccctcaaactcaaagtggagaaattcaccaa-tttaagtttgaaatgcaa 31337748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 25725861 - 25726031
Alignment:
Q  1 attgtgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaac 100  Q
    ||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25725861 attgtgtaattctctctaggagtcattaccaagaaacaatcgtataaaagataatgaaatagtacataggtgtaacttatttatagtgacttggagtaac 25725960  T
Q  101 taactccctaactaactttctacatagataacttgctctccaagttatcttcttcactatactctaatagt 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25725961 taactccctaactaactttctacatagataacttgctctccaagttatcttcttcactatactctaatagt 25726031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 40382810 - 40382978
Alignment:
Q  1 attgtgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaac 100  Q
    ||||||||||||| || |||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  40382810 attgtgtaattctctctaggaatcattactaagaaacaattgtaaaaaagataatgaaatagtatataggtgtagcttatttatagtgacttggagtacc 40382909  T
Q  101 taactccctaactaactttctacatagataacttgctctccaagttatcttcttcactatactctaata 169  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  40382910 taactccctaactaactttctacatagataacttactctccaagatatcttcttcactatactctaata 40382978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 25502078 - 25502295
Alignment:
Q  1 attgtgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaac 100  Q
    ||||||||||||| || ||||||||||| |||||||||||||||||||||||| || ||||||| |||| ||||||||||||||||||| ||||||||||    
T  25502078 attgtgtaattctctctaggagtcattatcaagaaacaattgtataaaagata-tggaatagtacatagatgtaacttatttatagtgaattggagtaac 25502176  T
Q  101 taactccctaactaactttctac-atagata--acttgctctc-caagttatcttcttcactatactctaatagtccccctcaaactcaaaatggggaaa 196  Q
    ||||||||||||||||||||||| |||| ||  |||   |  | | |||| | ||| |||||||||||||||||||||||||||||||||||||||||||    
T  25502177 taactccctaactaactttctactatagttaccactaagtaactctagtt-tattc-tcactatactctaatagtccccctcaaactcaaaatggggaaa 25502274  T
Q  197 ttcaccaattttgagtttgaaa 218  Q
    |||||||| |||||||||||||    
T  25502275 ttcaccaa-tttgagtttgaaa 25502295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 10410855 - 10410708
Alignment:
Q  1 attgtgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaac 100  Q
    ||||||||||||| || |||||||||  | ||||  ||| || |||||||||  |||||||||| ||||||||| |||||||||||||| ||||||||||    
T  10410855 attgtgtaattctctctaggagtcatcccaaagatgcaaatgaataaaagatg-tgaaatagtacataggtgtagcttatttatagtgatttggagtaac 10410757  T
Q  101 taactccctaactaactttctacatagataacttgctctccaagttatct 150  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||||||||    
T  10410756 taactccctaactaactttctac-taggttacttgctctccaagttatct 10410708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 10412385 - 10412281
Alignment:
Q  44 ataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctctccaa 143  Q
    |||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| | |||||||||||||    
T  10412385 ataaaagata-tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctac-taggttacttgctctccaa 10412288  T
Q  144 gttatct 150  Q
    |||||||    
T  10412287 gttatct 10412281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 25506995 - 25507113
Alignment:
Q  5 tgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaact-aa 103  Q
    ||||||||| ||  ||| ||||||| ||||||||||||||||||| ||| || ||||||| ||||||||| |||||||||||||| ||||||||||| ||    
T  25506995 tgtaattctctctgggattcattacaaagaaacaattgtataaaaaata-tggaatagtacataggtgtagcttatttatagtgaattggagtaactaaa 25507093  T
Q  104 ctccctaactaactttctac 123  Q
    |||||||| |||||||||||    
T  25507094 ctccctaagtaactttctac 25507113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 4895927 - 4895992
Alignment:
Q  153 ttcactatactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaat 219  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4895927 ttcacaatactctaatagtccccctcaaactcaaaatggggaaattcaccaa-tttgagtttgaaat 4895992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 33689863 - 33689805
Alignment:
Q  158 tatactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaa 218  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  33689863 tatactctaatagtcccc-tcaaactcaaaatggggaaattcaccaa-tttgagtttgaaa 33689805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 10412274 - 10412189
Alignment:
Q  132 cttgctctccaagttatcttcttcactatactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaat 219  Q
    ||||| |||||| ||| ||||| ||||||||||||||||||||||||||||||||||| | |||| | ||||| ||||||||||||||    
T  10412274 cttgcactccaaattaccttct-cactatactctaatagtccccctcaaactcaaaattgagaaaattaccaa-tttgagtttgaaat 10412189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 21637363 - 21637417
Alignment:
Q  153 ttcactatactctaatagtccccctcaaactcaaaatggggaaattcaccaattt 207  Q
    |||||||||||||||||||||||||||||||||| || | |||||||||||||||    
T  21637363 ttcactatactctaatagtccccctcaaactcaagattgagaaattcaccaattt 21637417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8081559 - 8081508
Alignment:
Q  1 attgtgtaattctttccaggagtcattaccaagaaacaattgtataaaagat 52  Q
    ||||||||||||| || |||||||||||| ||||||||||||||||||||||    
T  8081559 attgtgtaattctctctaggagtcattactaagaaacaattgtataaaagat 8081508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 8e-71; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 45035212 - 45034995
Alignment:
Q  1 attgtgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaac 100  Q
    ||||| || |||| || ||||||||| || ||||  ||| || |||||||||  ||||||| || ||||||||| |||||||||||||| ||||||||||    
T  45035212 attgtatagttctctctaggagtcatcacaaagatgcaaatgaataaaagatt-tgaaatattacataggtgtagcttatttatagtgatttggagtaac 45035114  T
Q  101 taactccctaactaactttctacatagataacttgctctccaagttatcttcttcactatactctaatagtccccctcaaactcaaaatggggaaattca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  45035113 taactccctaactaactttctacatagataacttgctctccaagttatcttctacactatactctaatagtccccctcaaactcaaaatagggaaattca 45035014  T
Q  201 ccaattttgagtttgaaatg 220  Q
    |||| |||||||||||||||    
T  45035013 ccaa-tttgagtttgaaatg 45034995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 45033417 - 45033250
Alignment:
Q  1 attgtgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaac 100  Q
    ||||| ||||| | || ||||||||| || ||||  ||| || |||||||||| |||| ||||| ||||||||| |||||||| ||||| |||| |||||    
T  45033417 attgtataattttctctaggagtcatcacaaagatgcaaatgaataaaagata-tgaattagtacataggtgtagcttatttacagtgatttggggtaac 45033319  T
Q  101 taactccctaactaactttctacatagataacttgctctccaagttatcttcttcactatactctaata 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45033318 taactccctaactaactttctacatagataacttgctctccaagttatcttcttcactatactctaata 45033250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 33187226 - 33187330
Alignment:
Q  1 attgtgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaac 100  Q
    ||||||||||| | || | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  33187226 attgtgtaattatctctatgagtcattaccaagaaacaattgtataaaagataatgaaatagtacataggtgtagcttatttatagtgacttggagtaac 33187325  T
Q  101 taact 105  Q
    |||||    
T  33187326 taact 33187330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 1015778 - 1015657
Alignment:
Q  1 attgtgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaac 100  Q
    ||||||||||||| ||  |||||| |||||||||||||||||||||||||||| || ||||||| ||||||||  |||||||||||||| ||||||||||    
T  1015778 attgtgtaattctctcttggagtcgttaccaagaaacaattgtataaaagata-tggaatagtacataggtgtggcttatttatagtgatttggagtaac 1015680  T
Q  101 taactccctaactaactttctac 123  Q
    ||||||| |||||||||||||||    
T  1015679 taactccgtaactaactttctac 1015657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 17308744 - 17308534
Alignment:
Q  1 attgtgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaac 100  Q
    ||||||||||||  || |||||||||||||||||||||||||||||||||||| ||| | ||       |||| ||||||||||||||| ||||||||||    
T  17308744 attgtgtaattcactctaggagtcattaccaagaaacaattgtataaaagata-tgacaaag-------gtgtgacttatttatagtgatttggagtaac 17308653  T
Q  101 taactccctaactaactttctac-atagata--acttgctctc-caagttatcttcttcactatactctaatagtccccctcaaactcaaaatggggaaa 196  Q
    ||||||||||||||||||||||| |||| ||  |||   |  | | |||| | |||| ||||||| ||||||||||||||||||||||||||||||||||    
T  17308652 taactccctaactaactttctactatagttaccactaagtaactctagtt-tattct-cactatattctaatagtccccctcaaactcaaaatggggaaa 17308555  T
Q  197 ttcaccaattttgagtttgaaa 218  Q
    |||||||| |||||||||||||    
T  17308554 ttcaccaa-tttgagtttgaaa 17308534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 4399574 - 4399620
Alignment:
Q  77 ttatttatagtgacttggagtaactaactccctaactaactttctac 123  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  4399574 ttatttatagtgagttggagtaactaactccctaactaactttctac 4399620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 30191615 - 30191518
Alignment:
Q  23 tcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaactaactccctaactaactttcta 122  Q
    ||||||||||||||||||||||||||||||| | ||||| || | ||| || | ||||||||||||| ||||  ||||||| ||||||||||||||||||    
T  30191615 tcattaccaagaaacaattgtataaaagata-taaaata-tacacagg-gtgatttatttatagtgatttggcataactaaatccctaactaactttcta 30191519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 25306724 - 25306663
Alignment:
Q  156 actatactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaat 219  Q
    |||||| ||||||||| ||| ||||||||||| |||| ||||||||||| ||||||||||||||    
T  25306724 actatattctaatagttccc-tcaaactcaaagtgggaaaattcaccaa-tttgagtttgaaat 25306663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 44782236 - 44782406
Alignment:
Q  1 attgtgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaac 100  Q
    ||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  44782236 attgtgtaattctctctaggagtcattactaagaaacaattgtataaaagataatgaaatagtacataggtgtagcttatttatagtgacttggagtaac 44782335  T
Q  101 taactccctaactaactttctacatagataacttgctctccaagttatct--tcttcactatactctaata 169  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||    
T  44782336 taactccctaactaactttctacatagataacttgctctctaagttatcttctcttcactatactctaata 44782406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 46679759 - 46679590
Alignment:
Q  1 attgtgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaac 100  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||    
T  46679759 attgtgtaattctctctaggagtcattaccaagaaacaattgtataaaagatgatgaagtagtacataggtgtagcttatttatagtgacttggagtaac 46679660  T
Q  101 taactccctaactaactttctac-atagataacttgctctccaagttatcttcttcactatactctaata 169  Q
    ||||||||||||||| ||||||| |||| |  ||||||| ||||||||||||||||||||||||||||||    
T  46679659 taactccctaactaattttctactatagtttgcttgctccccaagttatcttcttcactatactctaata 46679590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 3284497 - 3284438
Alignment:
Q  159 atactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaat 219  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||| ||||||||||||||    
T  3284497 atactctaatagtccccctcaaactcaaagtgggaaaactcaccaa-tttgagtttgaaat 3284438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 9312024 - 9311965
Alignment:
Q  159 atactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaat 219  Q
    ||||||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||||||    
T  9312024 atactctaatagtccccctcaaactcaaagtggagaatttcaccaa-tttgagtttgaaat 9311965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 9217597 - 9217542
Alignment:
Q  94 gagtaactaactccctaactaactttctacatagataacttgctctccaagttatct 150  Q
    |||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  9217597 gagtaattaactccctaactaactttctac-tagattacttgctctccaagatatct 9217542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 35891592 - 35891636
Alignment:
Q  157 ctatactctaatagtccccctcaaactcaaaatggggaaattcac 201  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||    
T  35891592 ctatactctaatagtccccctcaaactctaaatgagaaaattcac 35891636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 34350391 - 34350509
Alignment:
Q  5 tgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaactaac 104  Q
    ||||||||| |  |||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||  ||||||||| ||| ||||||||||||||    
T  34350391 tgtaattctctttaggagtcattactaagaaacaattgtataaaagatagtgaaatagtacataggtgtagtttatttataatgatttggagtaactaac 34350490  T
Q  105 tccctaactaactttctac 123  Q
    |||||||||||||||||||    
T  34350491 tccctaactaactttctac 34350509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 24544742 - 24544664
Alignment:
Q  44 ataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaactaactccctaactaactttctac 123  Q
    |||||||||| |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  24544742 ataaaagata-tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctac 24544664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 15868387 - 15868329
Alignment:
Q  159 atactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15868387 atactctaatagtccccctcaaactcaaaatggggaaattcaccaa-tttgagtttgaaa 15868329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 33869241 - 33869183
Alignment:
Q  159 atactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaa 218  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  33869241 atactctaatagtccccctcaaactcaaaatgggaaaattcaccaa-tttgagtttgaaa 33869183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 14620506 - 14620447
Alignment:
Q  159 atactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaat 219  Q
    ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||    
T  14620506 atactctaatagtccccctcaaatttaaaatggggaaattcaccaa-tttgagtttgaaat 14620447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 5378668 - 5378635
Alignment:
Q  174 ccctcaaactcaaaatggggaaattcaccaattt 207  Q
    ||||||||||||||||||||||||||||||||||    
T  5378668 ccctcaaactcaaaatggggaaattcaccaattt 5378635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 19645593 - 19645626
Alignment:
Q  174 ccctcaaactcaaaatggggaaattcaccaattt 207  Q
    ||||||||||||||||||||||||||||||||||    
T  19645593 ccctcaaactcaaaatggggaaattcaccaattt 19645626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 15689035 - 15688987
Alignment:
Q  57 aaatagtatataggtgtaacttatttatagtgacttggagtaactaact 105  Q
    |||||||| ||||| ||| |||||||||||||| |||||||||||||||    
T  15689035 aaatagtacataggagtagcttatttatagtgatttggagtaactaact 15688987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 31528854 - 31528826
Alignment:
Q  89 acttggagtaactaactccctaactaact 117  Q
    |||||||||||||||||||||||||||||    
T  31528854 acttggagtaactaactccctaactaact 31528826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 28133777 - 28133655
Alignment:
Q  1 attgtgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaac 100  Q
    |||||||| |||| || ||||||||| || ||||  |||||| |||||||||  |||||||||| ||||||||| |||||||||||||||||||||||||    
T  28133777 attgtgtagttctctctaggagtcatcacaaagatgcaattgaataaaagatggtgaaatagtacataggtgtagcttatttatagtgacttggagtaac 28133678  T
Q  101 taactccctaactaactttctac 123  Q
    |||||| ||||||||||||||||    
T  28133677 taactctctaactaactttctac 28133655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 4602307 - 4602202
Alignment:
Q  44 ataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctctccaa 143  Q
    |||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||  | |||||||||||||    
T  4602307 ataaaagata-tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctac-tatgttacttgctctccaa 4602210  T
Q  144 gttatctt 151  Q
    ||||||||    
T  4602209 gttatctt 4602202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 27682248 - 27682083
Alignment:
Q  1 attgtgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaac 100  Q
    |||||||| |||| || ||||||||| || ||||  ||| || |||||||||  || ||||||| |||||| |  ||||||||| |||| ||||||||||    
T  27682248 attgtgtagttctctctaggagtcatcacaaagatgcaaatgaataaaagatg-tggaatagtacataggtcttgcttatttattgtgatttggagtaac 27682150  T
Q  101 taactccctaactaactttctacatagataacttgctctccaagttatcttcttcactatactctaatag 170  Q
    ||||||||||||||||||| ||| |||||  |||||||||||||||||||   |||||||||||||||||    
T  27682149 taactccctaactaactttatac-tagattgcttgctctccaagttatct--ctcactatactctaatag 27682083  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 216
Target Start/End: Complemental strand, 4609126 - 4608938
Alignment:
Q  37 caattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaactaactcccta-------actaactttc-----taca 124  Q
    |||||| |||||||||| |||||||||| ||||||||| |||||||||||||| |||||||||||||||  |||       |||  || ||     ||      
T  4609126 caattgaataaaagata-tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactttctattatgttacttgctctccaagttatc 4609028  T
Q  125 tagataacttgctctccaagttatcttcttcactatactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttga 216  Q
    |||||  ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||  |||||||| || |||||||||||    
T  4609027 tagattgcttgcactccaagttaccttct-cactatactctaatagtccccctcaaactcaaaatggaaaaattcactaa-tttgagtttga 4608938  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 9032934 - 9032994
Alignment:
Q  153 ttcactatactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtt 213  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||    
T  9032934 ttcattatactctaatagtctccctcaaactcaaaatggagaaattcaccaaatttgagtt 9032994  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 41874563 - 41874519
Alignment:
Q  5 tgtaattctttccaggagtcattaccaagaaacaattgtataaaa 49  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  41874563 tgtaattctctctaggagtcattaccaagaaacaattgtataaaa 41874519  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 26667217 - 26667279
Alignment:
Q  153 ttcactatactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaa 218  Q
    ||||||||||| ||||||||||||||||||||  |||||  ||||||||||| |||||||||||||    
T  26667217 ttcactatactgtaatagtccccctcaaactc--aatggaaaaattcaccaa-tttgagtttgaaa 26667279  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 27972605 - 27972530
Alignment:
Q  44 ataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaactaactccctaactaactttctac 123  Q
    |||||||||| |||||||||| || |||||| || ||||||||||| ||||||| | |||||  ||||||||||||||||    
T  27972605 ataaaagata-tgaaatagtacattggtgtagctgatttatagtgatttggagt-agtaact--ctaactaactttctac 27972530  T

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Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 29924687 - 29924536
Alignment:
Q  1 attgtgtaattctttccaggagtcattaccaagaaacaattgtataaaagataatgaaatagtatataggtgtaacttatttatagtgacttggagtaac 100  Q
    ||||||||||||| || |||||||||||| || |||||||| ||||||||||||| ||||||       ||||| |||||||||||||||||||||||||    
T  29924687 attgtgtaattctctctaggagtcattactaaaaaacaattatataaaagataataaaatag-------gtgtagcttatttatagtgacttggagtaac 29924595  T
Q  101 taactccctaactaactttctacatagataacttgctctcc-aagttatcttcttcactatactctaatag 170  Q
    |||||            |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29924594 taact------------ttctacatagataacttgctctccaaagttatcttcttcactatactctaatag 29924536  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 21631450 - 21631513
Alignment:
Q  154 tcactatactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  21631450 tcactatactctaatagtccccctcaaactcaaaatgggaaaattcaccaa-tttgagtttgaaa 21631513  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 965055 - 964997
Alignment:
Q  91 ttggagtaactaactccctaactaactttctacatagataacttgctctccaagttatct 150  Q
    ||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||    
T  965055 ttggagtaactaactccctaactaactttctac-tatattacttgctctccaagttatct 964997  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 9878366 - 9878420
Alignment:
Q  153 ttcactatactctaatagtccccctcaaactcaaaatggggaaattcaccaattt 207  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||    
T  9878366 ttcactatactctaatagtcctcctcaaactcaaaatggggaaactcatcaattt 9878420  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 21464507 - 21464441
Alignment:
Q  57 aaatagtatataggtgtaacttatttatagtgacttggagtaactaactccctaactaactttctac 123  Q
    |||||||| ||| ||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  21464507 aaatagtacataagtgtagcttatttacagtgatttggagtaactaaccccctaactaactttctac 21464441  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 28124883 - 28124916
Alignment:
Q  174 ccctcaaactcaaaatggggaaattcaccaattt 207  Q
    ||||||||||||||||||||||||||||||||||    
T  28124883 ccctcaaactcaaaatggggaaattcaccaattt 28124916  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 4895520 - 4895487
Alignment:
Q  174 ccctcaaactcaaaatggggaaattcaccaattt 207  Q
    ||||||||||||||||||||||| ||||||||||    
T  4895520 ccctcaaactcaaaatggggaaaatcaccaattt 4895487  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 25471922 - 25471951
Alignment:
Q  85 agtgacttggagtaactaactccctaacta 114  Q
    ||||||||||||||||||||||||||||||    
T  25471922 agtgacttggagtaactaactccctaacta 25471951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 228
Target Start/End: Complemental strand, 44963110 - 44963049
Alignment:
Q  165 taatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaatgcaaagaat 228  Q
    |||||| | ||||||||||||||||||| ||||||||  | |||||||||||||| ||| ||||    
T  44963110 taatagcctccctcaaactcaaaatgggaaaattcac--aatttgagtttgaaatacaatgaat 44963049  T

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Target: scaffold0251 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 6221 - 6162
Alignment:
Q  159 atactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaat 219  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  6221 atactctaatagtccccctcaaactcaaaatggggaaaatcaccaa-tttgagtttgaaat 6162  T

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Target: scaffold0570 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 3010 - 3094
Alignment:
Q  25 attaccaagaaacaattgtataaaaga----taatgaaatagtatataggtgtaacttatttatagtgacttggagtaactaact 105  Q
    |||||||||||||||||||||||||||    || |||||||||| || |||||| | ||||||||||||||||||||||||||||    
T  3010 attaccaagaaacaattgtataaaagaaagatagtgaaatagtacatcggtgtagcatatttatagtgacttggagtaactaact 3094  T

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Target: scaffold0060 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 153 - 367
Target Start/End: Original strand, 9187 - 9387
Alignment:
Q  153 ttcactatactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaatgcaaagaatattctagtttattctcactatatt 252  Q
    ||||||||||||||||||||| |||||||||||| || | |||||||||||| |||||||||||||| ||| ||| |||  | |||||  |||| |||      
T  9187 ttcactatactctaatagtcctcctcaaactcaagattgagaaattcaccaa-tttgagtttgaaatacaatgaaaattacaatttat--tcacgata-- 9281  T
Q  253 gtaggcaaagtaaactaaagagtaaacaaagtaaaaccaaaaactgataggaaaagaggtaacacatgcccaatgcaaaacacagatccttccatagccc 352  Q
     ||  | ||||||||||  | || ||| |||| ||||  |||||| |||||||| || | |      |||||||||||||  ||||||||||||||||||    
T  9282 -taaaccaagtaaactagggggtgaactaagttaaac--aaaactaataggaaatgatgca------gcccaatgcaaaattcagatccttccatagccc 9372  T
Q  353 atgcccaatagagaa 367  Q
    |||||||||||||||    
T  9373 atgcccaatagagaa 9387  T

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Target: scaffold0245 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 11095 - 11035
Alignment:
Q  158 tatactctaatagtccccctcaaactcaaaatggggaaattcaccaattttgagtttgaaat 219  Q
    |||||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||    
T  11095 tatactctaatagtccccttcaaactcaaagtgggaaaattcaccaa-tttgagtttgaaat 11035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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