View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17617_low_8 (Length: 373)

Name: NF17617_low_8
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17617_low_8
NF17617_low_8
[»] chr2 (32 HSPs)
chr2 (1-356)||(9328238-9328591)
chr2 (27-356)||(9320645-9320974)
chr2 (24-307)||(9061358-9061637)
chr2 (23-317)||(9315689-9315972)
chr2 (23-317)||(9284379-9284667)
chr2 (129-308)||(12012750-12012927)
chr2 (137-356)||(10352882-10353101)
chr2 (23-226)||(9294920-9295117)
chr2 (129-308)||(11987685-11987865)
chr2 (119-307)||(9291676-9291865)
chr2 (155-307)||(8573725-8573877)
chr2 (129-356)||(12006268-12006496)
chr2 (129-356)||(12019038-12019266)
chr2 (137-216)||(7115959-7116038)
chr2 (155-343)||(10341140-10341328)
chr2 (141-295)||(9274277-9274431)
chr2 (157-308)||(10335649-10335800)
chr2 (155-307)||(10347552-10347707)
chr2 (23-307)||(10371509-10371780)
chr2 (23-107)||(12012925-12013009)
chr2 (26-107)||(11987863-11987944)
chr2 (155-332)||(9065788-9065962)
chr2 (23-123)||(9272317-9272417)
chr2 (23-80)||(8573931-8573988)
chr2 (23-87)||(9364287-9364351)
chr2 (46-90)||(12019282-12019326)
chr2 (23-70)||(9291608-9291655)
chr2 (178-356)||(9364442-9364620)
chr2 (250-308)||(16268954-16269012)
chr2 (245-307)||(7115844-7115906)
chr2 (188-308)||(8579703-8579823)
chr2 (23-67)||(9274232-9274276)
[»] scaffold0667 (1 HSPs)
scaffold0667 (23-308)||(4115-4394)
[»] chr3 (1 HSPs)
chr3 (24-306)||(37462141-37462410)
[»] chr1 (8 HSPs)
chr1 (197-318)||(29453492-29453613)
chr1 (196-310)||(29423097-29423211)
chr1 (25-118)||(29443680-29443774)
chr1 (196-310)||(29467976-29468090)
chr1 (23-156)||(29468109-29468248)
chr1 (23-118)||(29453663-29453757)
chr1 (23-91)||(29422983-29423050)
chr1 (197-310)||(29443517-29443630)
[»] chr8 (2 HSPs)
chr8 (186-303)||(41966911-41967028)
chr8 (23-85)||(41967132-41967194)
[»] chr4 (1 HSPs)
chr4 (206-356)||(26574700-26574850)
[»] chr7 (1 HSPs)
chr7 (250-307)||(45230294-45230351)


Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 9328238 - 9328591
Alignment:
Q  1 ttcaaagtaattagagaactattaagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9328238 ttcaaagtaattagagaactattaagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaactt 9328337  T
Q  101 atacatagcaaaaactcaaaaaactcatataatcaaaagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacaggga 200  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9328338 atacatagcaaaaactcaaaaaactcata--atcaaaagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacaggga 9328435  T
Q  201 aggaaggtggtacaagacttccaacagaaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9328436 aggaaggtggtacaagacttccaacagaaaacataacatcatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaa 9328535  T
Q  301 cagcttctcaaaatctaccctcaacaaaaccttttttccatcactcaaataaccta 356  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9328536 cagcttctcaaaatccaccctcaacaaaaccttttttccatcactcaaataaccta 9328591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 27 - 356
Target Start/End: Original strand, 9320645 - 9320974
Alignment:
Q  27 aattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactcaaaaaactc 126  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||     
T  9320645 aattcaatttgacctatagcatagagtttaacttaatatatcatatgatgggtccattgaattgacatcaactaatacatagcaaaaactcaaaaaacta 9320744  T
Q  127 atataatcaaaagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaaca 226  Q
     ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  9320745 gtataatcaaaacaagtaccttctcatgctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaaca 9320844  T
Q  227 gaaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttctcaaaatctaccctcaaca 326  Q
     ||||||||||   ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||  ||||||||||||||    
T  9320845 caaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttctcagcatctaccctcaaca 9320944  T
Q  327 aaaccttttttccatcactcaaataaccta 356  Q
    |||||||||||||||||||| |||||||||    
T  9320945 aaaccttttttccatcactcgaataaccta 9320974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 24 - 307
Target Start/End: Complemental strand, 9061637 - 9061358
Alignment:
Q  24 aagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactcaaaaaa 123  Q
    ||||||||||||| |||||||||||||||||||||| ||||||| |||||| ||  |||||||| |||||||||||||||||||||||||||||||||||    
T  9061637 aagaattcaatttaacctttagcatagagtttaactacatatattatatgatgg--ccattgaactgacatcaacttatacatagcaaaaactcaaaaaa 9061540  T
Q  124 ---ctcatataatcaaaagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagactt 220  Q
       ||||||||||||| |  |||||||||||||| ||||||||||||||||||||||||| | ||   |||||||||||||| |||||| ||| ||||||    
T  9061539 aaactcatataatcaata--agtaccttctcttggtcttgcttgtacgattctccttcttacaag---tatcaacagggaagaaaggtgatacgagactt 9061445  T
Q  221 ccaacagaaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttc 307  Q
    |||||| |||||||| | | ||  |||| |||||||||||||||||||||||||||| ||||| | | ||||||| |||||||||||    
T  9061444 ccaacataaaacatagcttcatcaaaattaggaattccttcaacataactaacttgttcactcttgagatcataccaaaacagcttc 9061358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 317
Target Start/End: Original strand, 9315689 - 9315972
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactcaaaaa 122  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||| |    
T  9315689 taagaattcaatttgacctttagcatagagtttaactacttatatcatatgatgggtccattgaactgacattaacttatacatagcaaaaactcaaata 9315788  T
Q  123 actcatataatcaaaagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttcc 222  Q
    |   ||||||         ||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |    
T  9315789 at--atataa---------gtaccttctcttgttcttgcttgtatgattctccttcttcctacaataatcaacagggaaggaaggtggtacaagactttc 9315877  T
Q  223 aacagaaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttctcaaaatcta 317  Q
    |||| ||| |||| | | ||  |||| || |||||||||||||||| |||||||| ||||| | || ||| || |||||||||||| | ||||||    
T  9315878 aacacaaatcatagcttcatccaaattagaaattccttcaacataaataacttgttcactcatcaagtcacaccaaaacagcttcttacaatcta 9315972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 23 - 317
Target Start/End: Complemental strand, 9284667 - 9284379
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactcaaaaa 122  Q
    ||||||||||||||||||||||  ||| ||||||||| |||| || |||||| ||||||||| || | | || |||||||||| ||||||||            
T  9284667 taagaattcaatttgacctttaatataaagtttaactacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaa-------- 9284576  T
Q  123 actcatataatcaa--aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagactt 220  Q
    ||||| ||||||||  |||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  9284575 actcagataatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatcaacagggaaggaaggtggcacaagactt 9284476  T
Q  221 ccaacagaaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttctcaaaatcta 317  Q
     ||||| ||| |||| | | ||  |||| ||||||||||||||||||| |||||||  ||||| | ||||||||| ||| |||||||| | ||||||    
T  9284475 tcaacacaaatcatagcttcatccaaattaggaattccttcaacataaataacttgctcactcttcaaatcataccaaaccagcttcttacaatcta 9284379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 129 - 308
Target Start/End: Complemental strand, 12012927 - 12012750
Alignment:
Q  129 ataatcaa-aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaacag 227  Q
    |||||||| |||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  12012927 ataatcaataagaagtaccttctcttgctcttgcttgaatgattccccttcttcctagaattatcaacagggaaggagggtggtacaagacttccaacac 12012828  T
Q  228 aaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttct 308  Q
    ||| |||| | | || ||||| |||||||||||||||||||||||||||   |||| | ||||||||| ||| ||||||||    
T  12012827 aaatcatagcttcatcgaaattaggaattccttcaacataactaacttg---actcttcaaatcataccaaaccagcttct 12012750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 137 - 356
Target Start/End: Original strand, 10352882 - 10353101
Alignment:
Q  137 aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaacagaaaacataa 236  Q
    |||||||||||| ||| ||||| ||||||| ||||||||| |||||||  |||||||||||||||| ||||||||||||||||||||||| ||| ||||     
T  10352882 aagaagtaccttttctcgctctcgcttgtaggattctcctgcttcctacgattatcaacagggaagtaaggtggtacaagacttccaacacaaatcatag 10352981  T
Q  237 catgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttctcaaaatctaccctcaacaaaaccttttt 336  Q
      | ||  |||| | ||||| ||| ||||||||||||||||  ||||   ||||||||| |||| || ||||||| ||||||||||||||||||||||||    
T  10352982 tgtcatccaaattaagaatttcttgaacataactaacttgtttactctccaaatcataccaaaatagattctcaacatctaccctcaacaaaaccttttt 10353081  T
Q  337 tccatcactcaaataaccta 356  Q
    || ||||||| |||||||||    
T  10353082 tctatcactcgaataaccta 10353101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 9295117 - 9294920
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactcaaaaa 122  Q
    ||||||||||||||||||||||||||||||||||||  |||| || |||||| ||||||||| || | | || |||||||||| ||||||||            
T  9295117 taagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaa-------- 9295026  T
Q  123 actcatataatcaa--aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagactt 220  Q
    ||||| ||||||||  |||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||    
T  9295025 actcagataatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatcaacagggaaggaaggtgctacgagactt 9294926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 129 - 308
Target Start/End: Complemental strand, 11987865 - 11987685
Alignment:
Q  129 ataatcaa-aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaacag 227  Q
    |||||||| |||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  11987865 ataatcaataagaagtaccttctcttggtcttgcttgaatgattccccttcttcctagaattatcaacagggaaggagggtggtacaagacttccaacac 11987766  T
Q  228 aaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttct 308  Q
    ||| |||| | | || ||| | ||||||||| ||||||||||||| |||| ||||| | ||||||||| ||| ||||||||    
T  11987765 aaatcatagcttcatcgaatttaggaattccgtcaacataactaaattgttcactcttcaaatcataccaaaccagcttct 11987685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 119 - 307
Target Start/End: Original strand, 9291676 - 9291865
Alignment:
Q  119 aaaaactcatataatcaa-aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaaga 217  Q
    ||||||||| |||||||| |||||||||| | |||| |||||| | ||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  9291676 aaaaactcagataatcaataagaagtaccgtttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaaga 9291775  T
Q  218 cttccaacagaaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttc 307  Q
    ||| ||||| ||| |||| | | ||  |||| ||||||||||||||||||||||| |||| ||||| | ||||||||| |||||||||||    
T  9291776 ctttcaacacaaatcatagcttcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttc 9291865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 155 - 307
Target Start/End: Complemental strand, 8573877 - 8573725
Alignment:
Q  155 ctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaacagaaaacataacatgatggaaatcaggaa 254  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |   ||   ||| |||||    
T  8573877 ctcttgcttgtacaattctcctccttcctacaattatcaacagggaagaaaggtggtacaagacttccaacacaaaacatagctgcattccaattaggaa 8573778  T
Q  255 ttccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttc 307  Q
    |||||||||||||||| |||||| ||||| | ||||||||| |||||||||||    
T  8573777 ttccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttc 8573725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 129 - 356
Target Start/End: Complemental strand, 12006496 - 12006268
Alignment:
Q  129 ataatcaa-aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaacag 227  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||  |||||||||||||||||     
T  12006496 ataatcaataagaagtaccttctcttgctcttgcttgtacgattctccttcttcgtacaattctcaacagggaaggaaggcagtacaagacttccaacac 12006397  T
Q  228 aaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttctcaaaatctaccctcaacaa 327  Q
    ||| |||  | | || |||||  |||||||| ||||  ||| |||||| | ||||| | ||||||||| ||| |||||||| |  || ||||   |||||    
T  12006396 aaatcatcgcttcatcgaaatttggaattccctcaatgtaattaacttcttcactcttcaaatcataccaaaccagcttcttatgatttacctcaaacaa 12006297  T
Q  328 aaccttttttccatcactcaaataaccta 356  Q
    ||  ||||||||||||||  |||||||||    
T  12006296 aagtttttttccatcacttgaataaccta 12006268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 129 - 356
Target Start/End: Complemental strand, 12019266 - 12019038
Alignment:
Q  129 ataatcaa-aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaacag 227  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||| |   |  || |||| |||| |||||||||||||||||||||||||||     
T  12019266 ataatcaataagaagtaccttctcttgctctttcttgtacgattctccttcgtatgattatcatcagcaggtaaggaaggtggtacaagacttccaacac 12019167  T
Q  228 aaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttctcaaaatctaccctcaacaa 327  Q
    ||| |||  | | || ||||| |||||||||||||||||||||||||||   |||| | ||||||||| ||| |||| | | |  || |||   ||||||    
T  12019166 aaatcatggcttcatcgaaattaggaattccttcaacataactaacttgctgactcttcaaatcataccaaaccagcatattatgatttacatccaacaa 12019067  T
Q  328 aaccttttttccatcactcaaataaccta 356  Q
    ||||||||||||||||||| |||||||||    
T  12019066 aaccttttttccatcactcgaataaccta 12019038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 7116038 - 7115959
Alignment:
Q  137 aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaag 216  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7116038 aagaagtaccttctcttgctcttgcttgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtacaag 7115959  T

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Target: chr2; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 155 - 343
Target Start/End: Original strand, 10341140 - 10341328
Alignment:
Q  155 ctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaacagaaaacataacatgatggaaatcaggaa 254  Q
    |||||||||| | |||||||||||||||||  ||| |||||||||||| |||||||||| | |||||||||| | | |||| ||| ||  ||||||||||    
T  10341140 ctcttgcttgaaggattctccttcttcctacgattgtcaacagggaagaaaggtggtactatacttccaacacacatcatagcatcatccaaatcaggaa 10341239  T
Q  255 ttccttcaac---ataactaacttgtgcactcctaaaatcatacaaaaacagcttctcaaaatctaccctcaacaaaaccttttttccatca 343  Q
    ||||||||||   ||||||||||||| |||||   ||||||||| |||||||   ||||| |||||||||||||||||||  ||||||||||    
T  10341240 ttccttcaacataataactaacttgttcactctccaaatcataccaaaacag---ctcaacatctaccctcaacaaaaccaattttccatca 10341328  T

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Target: chr2; HSP #16
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 141 - 295
Target Start/End: Original strand, 9274277 - 9274431
Alignment:
Q  141 agtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaacagaaaacataacatg 240  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||  |||  |||         
T  9274277 agtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacagggaaggagggtggtacaaaacttccaacccaaataatagttcc 9274376  T
Q  241 atggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatac 295  Q
    || ||| | ||||||||||| |||| ||||||||||| ||||| | |||||||||    
T  9274377 attgaagttaggaattcctttaacaaaactaacttgttcactcttcaaatcatac 9274431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 157 - 308
Target Start/End: Original strand, 10335649 - 10335800
Alignment:
Q  157 cttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaacagaaaacataacatgatggaaatcaggaatt 256  Q
    ||||||||||||||||| ||||||||||  |||||||||||| ||||||||||  ||||||||||||||| ||| ||||   | ||  |||| |||||||    
T  10335649 cttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtgaaacaagacttccaacacaaatcatagtgtcatccaaattaggaatt 10335748  T
Q  257 ccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttct 308  Q
    |||||||||||||||| |||| ||||| | ||||||||| |||||| |||||    
T  10335749 ccttcaacataactaatttgttcactcttcaaatcataccaaaacaacttct 10335800  T

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Target: chr2; HSP #18
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 155 - 307
Target Start/End: Original strand, 10347552 - 10347707
Alignment:
Q  155 ctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaacagaaaacataacatgatggaaat---cag 251  Q
    |||||||||| | |||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||| ||||||||   | ||  | ||    ||    
T  10347552 ctcttgcttggatgattctccttcttcctacgattatcaacagggaaggaaggtgggacaagacttccaacacaaaacatagtttcattcatattaggag 10347651  T
Q  252 gaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttc 307  Q
    ||||||||||||||||||||| |||| ||||| | ||||||||| |||||||||||    
T  10347652 gaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttc 10347707  T

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Target: chr2; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 307
Target Start/End: Original strand, 10371509 - 10371780
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactca--aa 120  Q
    |||||||||||||||||||||| || ||||||||||| ||||||| |||||| || ||||||||| ||| || |||||||||| | ||||||||||   |    
T  10371509 taagaattcaatttgacctttaacacagagtttaactgcatatataatatgatggatccattgaactgatattaacttatacacaacaaaaactcagtta 10371608  T
Q  121 aaactcatataatcaaaagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaa---ggaaggtggtacaaga 217  Q
    ||||            || |||||||||      |||||||||||| |||||||||||||||||  |||||||||| || |   ||  ||||||||||||    
T  10371609 aaac------------aataagtacctt------ctcttgcttgtatgattctccttcttcctaccattatcaacaaggtaagggggtggtggtacaaga 10371690  T
Q  218 cttccaacagaaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttc 307  Q
    || |||||| ||| |||| ||| ||  |||| || | ||||||||||||||||||||||| ||||| | ||||||||| |||||||||||    
T  10371691 ctaccaacacaaaccatagcatcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttc 10371780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 12013009 - 12012925
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacata 107  Q
    |||||||||||||||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||| || ||||||||||||    
T  12013009 taagaattcaatttgacctttaacatggagtctaactacatatatcatatgatgggtccattgaattgatattaacttatacata 12012925  T

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Target: chr2; HSP #21
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 11987944 - 11987863
Alignment:
Q  26 gaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacata 107  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||| |||| |||||||||||||||| || ||||||||||||    
T  11987944 gaattcaatttgacctttaacataaagtttaactacatatatcacatgatgggtccattgaattgatattaacttatacata 11987863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 332
Target Start/End: Complemental strand, 9065962 - 9065788
Alignment:
Q  155 ctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaacagaaaacataacatgatggaaatcaggaa 254  Q
    |||||| |||| ||||||||||||   ||| ||||||||||||||||||||| ||||||||||||| ||||| ||| || |   | ||   ||| |||||    
T  9065962 ctcttggttgttcgattctccttc---ctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaa 9065866  T
Q  255 ttccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttctcaaaatctaccctcaacaaaacct 332  Q
     ||||||||||||| |||||||| ||||| | ||||||||| |||| ||||||| |  |||||||  |||||||||||    
T  9065865 ctccttcaacataaataacttgttcactcttcaaatcataccaaaagagcttctgatgatctacctccaacaaaacct 9065788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 9272317 - 9272417
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactcaaaaa 122  Q
    ||||||||||||| |||||||||||| | |||||| | || | ||||||||| |||| |||| || |||||| ||||||||||||||||||||| |||||    
T  9272317 taagaattcaattagacctttagcattgggtttaattgcaaagatcatatgatgggttcattaaactgacattaacttatacatagcaaaaactaaaaaa 9272416  T
Q  123 a 123  Q
    |    
T  9272417 a 9272417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 8573988 - 8573931
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtc 80  Q
    |||||||| |||||||||||||||||||||||||||  |||||||||||||| |||||    
T  8573988 taagaatttaatttgacctttagcatagagtttaaccacatatatcatatgatgggtc 8573931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 9364287 - 9364351
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaa 87  Q
    ||||||||| ||||||||||||  ||||||||||| | |||||||||||||| |||| |||||||    
T  9364287 taagaattccatttgacctttaatatagagtttaagtacatatatcatatgatgggttcattgaa 9364351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 12019326 - 12019282
Alignment:
Q  46 catagagtttaacttcatatatcatatgacgggtccattgaattg 90  Q
    |||||||||||||| |||||||||||||| |||||||||||||||    
T  12019326 catagagtttaactacatatatcatatgatgggtccattgaattg 12019282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 9291608 - 9291655
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcat 70  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||||||    
T  9291608 taagaattcaatttaacctttagcatagagtttaactacatgtatcat 9291655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 356
Target Start/End: Original strand, 9364442 - 9364620
Alignment:
Q  178 cttcctagaattatcaacagggaaggaaggtggtacaagacttccaacagaaaacataacatgatggaaatcaggaattccttcaacataactaacttgt 277  Q
    ||||||| ||||||||||||| || ||||||||||||||||| |||||| ||| |||| | | ||  | || ||||||||||  ||||  | |||| | |    
T  9364442 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttt 9364541  T
Q  278 gcactcctaaaatcatacaaaaacagcttctcaaaatctaccctcaacaaaaccttttttccatcactcaaataaccta 356  Q
     ||||| | | ||| ||| |||||||||||| |  |||||    ||| |||||||| |||||||||||| |||||||||    
T  9364542 tcactcttgagatcgtaccaaaacagcttcttacgatctatttccaataaaaccttctttccatcactcgaataaccta 9364620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 16268954 - 16269012
Alignment:
Q  250 aggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttct 308  Q
    ||||||||||||||||||||||||| || ||||| | ||||||||| |||||| |||||    
T  16268954 aggaattccttcaacataactaactcgttcactcttcaaatcataccaaaacaacttct 16269012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 7115906 - 7115844
Alignment:
Q  245 aaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttc 307  Q
    |||| |||||||||||||||| ||||||||||| | ||| | ||||||||| ||| |||||||    
T  7115906 aaattaggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagcttc 7115844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 308
Target Start/End: Complemental strand, 8579823 - 8579703
Alignment:
Q  188 ttatcaacagggaaggaaggtggtacaagacttccaacagaaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaa 287  Q
    ||||||| ||| ||||||||||||| |||  |||||||| ||| ||||   | || ||||| ||||||||||| |||| || |||||| | ||||  | |    
T  8579823 ttatcaataggcaaggaaggtggtagaagggttccaacataaatcatagtttcattgaaattaggaattccttgaacacaagtaacttcttcacttttga 8579724  T
Q  288 aatcatacaaaaacagcttct 308  Q
     ||||||| ||||||||||||    
T  8579723 gatcataccaaaacagcttct 8579703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 9274232 - 9274276
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatat 67  Q
    |||||||||||  |||||||||||||| ||||||||| |||||||    
T  9274232 taagaattcaacatgacctttagcataaagtttaactacatatat 9274276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 23 - 308
Target Start/End: Original strand, 4115 - 4394
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactcaaaaa 122  Q
    ||||||||||||||||  ||||||| |||||||||||  ||| ||||||||| ||||||||||||  || || |||||||||| |||||||||| |||||    
T  4115 taagaattcaatttgagttttagcacagagtttaactaaataaatcatatgatgggtccattgaacagatattaacttatacacagcaaaaactgaaaaa 4214  T
Q  123 actcatataatcaaaagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttcc 222  Q
    ||||  |||||||| |  |||||||| |||||||||||| |||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  4215 actcg-ataatcaata--agtaccttttcttgctcttgcatgtatgattctccttcttactagaattatcaacaggaaaggaaggtggtacaagacttcc 4311  T
Q  223 aacagaaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttct 308  Q
    |||| ||| | || |   || ||||||||||||| |||   |||||||||||||| || || | ||||||||| ||||||||||||    
T  4312 aacacaaatcttagctccattgaaatcaggaatttctt---cataactaacttgttcagtcttcaaatcataccaaaacagcttct 4394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 24 - 306
Target Start/End: Original strand, 37462141 - 37462410
Alignment:
Q  24 aagaattcaatttgaccttt-agcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactcaaaaa 122  Q
    |||||||||||||||||||| ||||||||  |||||| |||||||||||||| ||||||| |||| | |||  |||||||||||| |||||||||||||     
T  37462141 aagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaatgaactaacagaaacttatacataacaaaaactcaaaa- 37462239  T
Q  123 actcatataatcaaaagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttcc 222  Q
                    ||| ||||||||||||||||||||||| |  | ||||||||||||| |||||||||||||||| | ||||| |||||||||| |    
T  37462240 ----------------gaaataccttctcttgctcttgcttgtcctgtcctccttcttcctacaattatcaacagggaaaggaggtgatacaagactttc 37462323  T
Q  223 aacagaaaacataaca---tgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagctt 306  Q
    |||| ||| |||| ||     ||  |||| ||||| |||||||| ||||||||||||| ||||| |  |||||||| ||||||||||    
T  37462324 aacacaaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaacagctt 37462410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 197 - 318
Target Start/End: Complemental strand, 29453613 - 29453492
Alignment:
Q  197 gggaaggaaggtggtacaagacttccaacagaaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcataca 296  Q
    |||||||||||||| ||||||||||||||| ||| |||| | |||| ||||| |||||||||||||||| ||||||||||| ||||| | | |||||||     
T  29453613 gggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagatcatacc 29453514  T
Q  297 aaaacagcttctcaaaatctac 318  Q
    |||||||||||||| |||||||    
T  29453513 aaaacagcttctcacaatctac 29453492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 310
Target Start/End: Original strand, 29423097 - 29423211
Alignment:
Q  196 agggaaggaaggtggtacaagacttccaacagaaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatac 295  Q
    |||||||||||||| |||||||||||||||| ||| |||  | |||| ||||| ||||||||||| |||| ||||||||||| ||||| | | |||||||    
T  29423097 agggaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcatac 29423196  T
Q  296 aaaaacagcttctca 310  Q
     ||||||||||||||    
T  29423197 caaaacagcttctca 29423211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 29443774 - 29443680
Alignment:
Q  25 agaattcaatttgaccttt-agcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactca 118  Q
    ||||||||||||||||||| | ||| ||||||||||  ||||||||||||| |||||||||||||||| || |||||||||| || |||||||||    
T  29443774 agaattcaatttgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactca 29443680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 310
Target Start/End: Complemental strand, 29468090 - 29467976
Alignment:
Q  196 agggaaggaaggtggtacaagacttccaacagaaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatac 295  Q
    ||||||||||||||||||||||||||||||| ||| |||| | | ||  |||| ||||||||||||||||||| |||| ||| ||||| | | |||||||    
T  29468090 agggaaggaaggtggtacaagacttccaacacaaatcatagcttcattcaaattaggaattccttcaacataattaacatgttcactcttgagatcatac 29467991  T
Q  296 aaaaacagcttctca 310  Q
     |||||| |||||||    
T  29467990 caaaacaacttctca 29467976  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 29468248 - 29468109
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatat-----gacgggtccattgaat-tgacatcaacttatacatagcaaaaact 116  Q
    |||||||||||||||||||||   | ||||||||||| ||||||||||||     ||  |||||||| | | ||| || |||||||||||| ||||||||    
T  29468248 taagaattcaatttgacctttta-acagagtttaactgcatatatcatatcatatgataggtccattaactgtgatattaacttatacataacaaaaact 29468150  T
Q  117 caaaaaactcatataatcaa-aagaagtaccttctcttgct 156  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  29468149 caaaaaactcagacaatcaataagaagtaccttctcttgct 29468109  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 29453757 - 29453663
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactca 118  Q
    |||||||||||||| || |||| |||| ||||||||| |||||||||||||| || || |||||| ||| || |||||||||| ||||||||||||    
T  29453757 taagaattcaattt-acttttaacataaagtttaactgcatatatcatatgatggatctattgaactgaaattaacttatacagagcaaaaactca 29453663  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 29422983 - 29423050
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattga 91  Q
    |||||||||||||||||||||   | |||||||||||  |||||||||||||  |||||||||||||||    
T  29422983 taagaattcaatttgacctttta-acagagtttaactagatatatcatatgatcggtccattgaattga 29423050  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 310
Target Start/End: Complemental strand, 29443630 - 29443517
Alignment:
Q  197 gggaaggaaggtggtacaagacttccaacagaaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcataca 296  Q
    ||||| |||||| ||||||||||||||||| |||  ||  ||||||  |    ||||||||||||||||||||||||   | ||||| | | |||||||     
T  29443630 gggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcatacc 29443531  T
Q  297 aaaacagcttctca 310  Q
    ||||||||||||||    
T  29443530 aaaacagcttctca 29443517  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 186 - 303
Target Start/End: Complemental strand, 41967028 - 41966911
Alignment:
Q  186 aattatcaacagggaaggaaggtggtacaagacttccaacagaaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcct 285  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||  | | ||  |||| ||||||||||||||||||| ||| |||| ||||| |    
T  41967028 aattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttcaacataagtaatttgttcactctt 41966929  T
Q  286 aaaatcatacaaaaacag 303  Q
     ||||||||| |||||||    
T  41966928 caaatcataccaaaacag 41966911  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 41967194 - 41967132
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattg 85  Q
    |||||||||||||| ||||||| |||||||||||| | ||| |||  ||||| ||||||||||    
T  41967194 taagaattcaatttaacctttaacatagagtttaagtacatgtattgtatgatgggtccattg 41967132  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 356
Target Start/End: Original strand, 26574700 - 26574850
Alignment:
Q  206 ggtggtacaagacttccaacagaaaacataacatgatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagct 305  Q
    ||||||||||||||||||||| ||| |||| | | ||  |||||| ||  | ||| || || |||||||||   ||||   ||||||||| ||||||| |    
T  26574700 ggtggtacaagacttccaacacaaatcatagcgtcatccaaatcaagatcttcttgaaaatgactaacttgattactctccaaatcataccaaaacagat 26574799  T
Q  306 tctcaaaatctaccctcaacaaaaccttttttccatcactcaaataaccta 356  Q
    || ||| ||||||||||||||||||||||||||||||| |  |||||||||    
T  26574800 tcacaacatctaccctcaacaaaaccttttttccatcaatggaataaccta 26574850  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 45230294 - 45230351
Alignment:
Q  250 aggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttc 307  Q
    ||||||||||| ||||| | |||||||| ||||| | ||||||||| |||||||||||    
T  45230294 aggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaaacagcttc 45230351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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