View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17618_low_1 (Length: 752)
Name: NF17618_low_1
Description: NF17618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17618_low_1 |
 | |
|
| [»] scaffold0710 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 704; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 10 - 737
Target Start/End: Original strand, 51854963 - 51855690
Alignment:
| Q |
10 |
aagaatatggaaatgtagaatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatatatatctga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51854963 |
aagaatatggaaatgtagaatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatatatatctga |
51855062 |
T |
|
| Q |
110 |
agatgaccaagtgctgacgtattttttcaagatggggaagtttagtttggctgtctatgattccatccatgatactttgaagattcctgcaattcaaaac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855063 |
agatgaccaagtgctgacgtattttttcaagatggggaagtttagtttggctgtctatgattccatccatgatactttgaagattcctgcaattcaaaac |
51855162 |
T |
|
| Q |
210 |
aatatccatgatctcgtaccagaagcctaccttccagaaatctacgttaaaagtttgatatcacctttttctcaggattaggatgtagatgttgtgctat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855163 |
aatatccatgatctcgtaccagaagcctaccttccagaaatctactttgaaagtttgatatcacatttttctcaggattaggatgtagatgttgtgctat |
51855262 |
T |
|
| Q |
310 |
gtgaacttatgatcttgttatttattttatgctggttctggttaccaatgacttcacgggttactgttgatttatggtgtatggaatatgcggcttgaga |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855263 |
gtgaacttatgatcttgttatttattttatgctggttctggttaccaatgacttcacgggttactgttgatttatggtgtatggaatatgcggcttgaga |
51855362 |
T |
|
| Q |
410 |
aactgctacgttatttcaattttcttattagttacagttttgtcatcgtgcattacattttatatagttaacaatcatttaaatcttccaccctagatta |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51855363 |
aactgctacgttatttcaattttcttattagttagagttttgtcatcgtgcattacattttatatagttaacaatcatttaaatcttccactctagatta |
51855462 |
T |
|
| Q |
510 |
taaatttctcttaatatataactctaatgttctcgattttctttttctatgtcattggttggattctgcatctgctgcactgcctgagtcacaattaaca |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855463 |
taaatttctcttaatatataactctaatgttctcgattttctttttctatatcattggttggattctgcatctgctgcactgcctgagtcacaattaaca |
51855562 |
T |
|
| Q |
610 |
gttgttatgcagccattgacttcaaacaagcttaattcaatatcagatagatatgaaaaatatttgaaggtggacgtgacaaaaaattaagaccttgcag |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855563 |
gttgttatgcagccattgacttcaaacaagcttaattcaatatcagatagatatgaaaaatatttgaaggtggacgtgacaaaaaattaagaccttgcag |
51855662 |
T |
|
| Q |
710 |
ttattaataattctctaggttcctaaat |
737 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
51855663 |
ttattaataattctctaggttcctaaat |
51855690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 407
Target Start/End: Original strand, 51858624 - 51859022
Alignment:
| Q |
12 |
gaatatggaaatgtagaatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatatatatctgaag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
51858624 |
gaatatggaaatgtagaatcttggactaaattgttaagtgttcctcaaatgggaggttgtggttgttatatctataccaaagtattatatatatctgaag |
51858723 |
T |
|
| Q |
112 |
atgaccaagtgctgacgtattttttcaagatggggaagtttagtttggctgtctatgattccatccatgatactttgaagattcctgcaattcaaaacaa |
211 |
Q |
| |
|
||| || | |||||| ||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |
|
|
| T |
51858724 |
atggcctaatgctgatatattttttcaagagagggaaatttaggttggctgtctatgattccattaatgatacattgaagattcctgaaattcaaaacaa |
51858823 |
T |
|
| Q |
212 |
tatccatgatctcgtaccagaagcctaccttccagaaatctacgttaaaagtttgatatcacctttttctcaggattaggatgtagatgttgtgctatgt |
311 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||||||||| ||||| || ||| ||||||||||||| |||||||| |||| ||||||||||||||||||||| |
|
|
| T |
51858824 |
tatccatgatctggtaaaagaagtctaccttccagaagtctacattgaaactttgatatcacctctttctcagtattaagatgtagatgttgtgctatgt |
51858923 |
T |
|
| Q |
312 |
gaacttatgatcttgttatttattttatgctggttctggtt---accaatgacttcacgggttactgttgatttatggtgtatggaatatgcggcttga |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||| |||||||||||||||||||| |||||| |||||| |
|
|
| T |
51858924 |
gaacttatgatcttgttatttattttatgcttgttctggttaccaccaatgactttacgagttattgttgatttatggtgtatggtatatgcagcttga |
51859022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 12 - 526
Target Start/End: Complemental strand, 51756783 - 51756264
Alignment:
| Q |
12 |
gaatatggaaatgtagaatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatatatatctgaag |
111 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||||| | |
|
|
| T |
51756783 |
gaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaatgggaga------tcattatatctataccaaaccattatatatttctgagg |
51756690 |
T |
|
| Q |
112 |
atgaccaagtgctgacgtattttttcaagatggggaagtttagtttggctgtctatgattccatccatgatactttgaagattcctgcaattcaaaacaa |
211 |
Q |
| |
|
||||||||||||||| ||||||| | |||| ||| || |||||||||||| ||||||||||||| |||||||||| |||||||||| | |||||||| |
|
|
| T |
51756689 |
atgaccaagtgctgatgtattttgtgaagaggggaaaatttagtttggctttctatgattccataaatgatacttttaagattcctgaagcccaaaacaa |
51756590 |
T |
|
| Q |
212 |
tatccatgatctcgt---accagaagcctaccttccagaaatctacgttaaaagtttgatatcacctttttctcaggattaggatgtagatgttgtgcta |
308 |
Q |
| |
|
|| |||||||| | ||| |||| | | |||||||| || || || | ||||||||||||||||| |||||| |||||||| |||||||||||| | |
|
|
| T |
51756589 |
cattcatgatctgatgatacctgaagtttgcattccagaagtccactttgagagtttgatatcacctttatctcagtattaggatttagatgttgtgcaa |
51756490 |
T |
|
| Q |
309 |
tgtgaacttatgatcttgttatttattttatgctggttctggttaccaatgacttcacgggttactgttgatttatggtgtatggaatatgcggcttgag |
408 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||||||||||||||||| | |||||||| |||| ||||||| ||| | |||||| |||||||| |
|
|
| T |
51756489 |
tgtgaacttatggtcttgttatttgatttatgctttttctggttaccaatgacattacgggttattgttaatttatgatgtgagaaatatgaggcttgag |
51756390 |
T |
|
| Q |
409 |
aaactgctacgttatttcaattttcttattagttacag-------ttttgtcatcgtgcattaca-ttttatatagttaacaatcatttaaatcttccac |
500 |
Q |
| |
|
||| ||||| ||||||| |||| || ||||||| || |||||||||| ||||||||| |||||||| ||||||||| || |||||||||| |
|
|
| T |
51756389 |
aaattgctatgttattttcatttatttgttagttagagttgttgattttgtcatcatgcattacatttttatatgtttaacaatccttcaaatcttccat |
51756290 |
T |
|
| Q |
501 |
cctagattataaatttctcttaatat |
526 |
Q |
| |
|
| ||||||||||||||| ||||||| |
|
|
| T |
51756289 |
catagattataaatttcatttaatat |
51756264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 12 - 377
Target Start/End: Complemental strand, 51762965 - 51762605
Alignment:
| Q |
12 |
gaatatggaaatgtagaatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatatatatctgaag |
111 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| ||||||||||||| |||| |||||| |||| || ||||| |||||||||||||||||| |
|
|
| T |
51762965 |
gaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaataggagatcgtggtttttattccttaaccaaggcattatatatatctgaag |
51762866 |
T |
|
| Q |
112 |
atgaccaagtgctgacgtattttttcaagatggggaagtttagtttggctgtctatgattccatccatgatactttgaagattcctgcaattcaaaacaa |
211 |
Q |
| |
|
||||||||||||||| |||| || | ||||||||||| |||||||||| |||||||| |||||| |||||||||| ||||||||| |||||||||||| |
|
|
| T |
51762865 |
atgaccaagtgctgatgtatattctgaagatggggaaatttagtttggttgtctatggttccataaatgatacttttaagattcctaaaattcaaaacaa |
51762766 |
T |
|
| Q |
212 |
tatccatgatc---tcgtaccagaagcctaccttccagaaatctacgttaaaagtttgatatcacctttttctcaggattaggatgtagatgttgtgcta |
308 |
Q |
| |
|
|| ||||||| | ||||| | || | ||| ||| |||||||| | ||||||||||||||||||| ||| ||||||||||||||| ||||||| |
|
|
| T |
51762765 |
cattcatgatccgttgataccattattctgcattctggaagtctacgttgagagtttgatatcacctttttttcaatattaggatgtagatgctgtgcta |
51762666 |
T |
|
| Q |
309 |
tgtgaacttatgatcttgttatttattttatgctggttctggttaccaatgacttcacgggttactgtt |
377 |
Q |
| |
|
|| ||||||||||||||| | ||||| |||||||| |||||||||| |||||||| |||| |
|
|
| T |
51762665 |
tg--------tgatcttgttatttaatacatgctttttctggtttccaatgactttacgggttattgtt |
51762605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 51381490 - 51381291
Alignment:
| Q |
10 |
aagaatatggaaatgtagaatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatatatatctga |
109 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| || ||||| | |||| ||| |||||| | | |||| | | || ||||||| || || |
|
|
| T |
51381490 |
aagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatggaaggtcgtggttttcttggctattgccagtcagtatatatttcgga |
51381391 |
T |
|
| Q |
110 |
agatgaccaagtgctgacgtattttttcaagatggggaagtttagtttggctgtctatgattccatccatgatactttgaagattcctgcaattcaaaac |
209 |
Q |
| |
|
|||||||||||| ||| | | ||| | ||||||||||| || |||||| |||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
51381390 |
agatgaccaagttttgatgcagtttctaaagatggggaaattcagtttgcttgtctatgattccaaaaatgatactttgaagattcctgaaattcaaaac |
51381291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 555 - 660
Target Start/End: Complemental strand, 51380407 - 51380301
Alignment:
| Q |
555 |
tctatgtcattggttggattctgcatct-gctgcactgcctgagtcacaattaacagttgttatgcagccattgacttcaaacaagcttaattcaatatc |
653 |
Q |
| |
|
||||| |||||||||||||||||||| | | ||| || ||| |||||||||||||||| |||| | |||||| | |||||||||||||| |||||||| |
|
|
| T |
51380407 |
tctatatcattggttggattctgcattttggcgcagtgtttgattcacaattaacagttgctatgaaaccattggcctcaaacaagcttaagtcaatatc |
51380308 |
T |
|
| Q |
654 |
agataga |
660 |
Q |
| |
|
| ||||| |
|
|
| T |
51380307 |
aaataga |
51380301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 51377966 - 51377913
Alignment:
| Q |
249 |
atctacgttaaaagtttgatatcacctttttctcaggattaggatgtagatgtt |
302 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
51377966 |
atctacgttgagagtttgatctcacctttttctcaatattaggatgtagatgtt |
51377913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 522
Target Start/End: Original strand, 51832829 - 51832882
Alignment:
| Q |
469 |
ttatatagttaacaatcatttaaatcttccaccctagattataaatttctctta |
522 |
Q |
| |
|
||||||| |||||||||||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
51832829 |
ttatataattaacaatcattcaaatcttcctacatagattataaatttctctta |
51832882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 465 - 518
Target Start/End: Original strand, 51838336 - 51838389
Alignment:
| Q |
465 |
cattttatatagttaacaatcatttaaatcttccaccctagattataaatttct |
518 |
Q |
| |
|
||||||||||||||| | |||||| ||||||||| || |||||||||||||||| |
|
|
| T |
51838336 |
cattttatatagttagctatcattcaaatcttcctccatagattataaatttct |
51838389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 140; Significance: 6e-73; HSPs: 2)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 598 - 737
Target Start/End: Original strand, 2946 - 3085
Alignment:
| Q |
598 |
tcacaattaacagttgttatgcagccattgacttcaaacaagcttaattcaatatcagatagatatgaaaaatatttgaaggtggacgtgacaaaaaatt |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2946 |
tcacaattaacagttgttatgcagccattgacttcaaacaagcttaattcaatatcagatagatatgaaaaatatttgaaggtggacgtgacaaaaaatt |
3045 |
T |
|
| Q |
698 |
aagaccttgcagttattaataattctctaggttcctaaat |
737 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3046 |
aagaccttgcagttattaataattctctaggttcctaaat |
3085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 465 - 522
Target Start/End: Complemental strand, 2323 - 2265
Alignment:
| Q |
465 |
cattttatatagttaac-aatcatttaaatcttccaccctagattataaatttctctta |
522 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
2323 |
cattttatatagttagctaatcattcaaatcttcctacatagattataaatttctctta |
2265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 12 - 508
Target Start/End: Complemental strand, 4743878 - 4743373
Alignment:
| Q |
12 |
gaatatggaaatgtagaatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatatatatctgaag |
111 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| |||||||||||||||||| | | ||||||| || |||||||||||||| ||||| |
|
|
| T |
4743878 |
gaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctgagc |
4743779 |
T |
|
| Q |
112 |
atgaccaagtgctgacgtattttttcaagatggggaagtttagtttggctgtctatgattccatccatgatactttgaagattcctgcaattcaaaacaa |
211 |
Q |
| |
|
||||||||||||||| ||||||| | |||| | |||| |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||| |
|
|
| T |
4743778 |
atgaccaagtgctgatgtattttatgaagaggaggaaatttagtttggctgtctatgattccataaatgatacttataagattcctgaaattcaaggcaa |
4743679 |
T |
|
| Q |
212 |
tatccatgatc---tcgtaccagaagcctaccttccagaaatctacgttaaaagtttgatatcacctttttctcaggattaggatgtagatgttgtgcta |
308 |
Q |
| |
|
||||| | || | | | | | ||| ||||| | ||||| || | ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4743678 |
catccaagttccgatggaaggaagattctattttccatacgtctacattgagagtttgatatcacctttttttcaggattaggatgtagatgttgtgcta |
4743579 |
T |
|
| Q |
309 |
tgtgaacttatgatcttgttatttattttatgctggttctggttaccaatgacttcacgggttactgttgatttatggtgtatggaatatgcggcttgag |
408 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||| || |||||||||| |||||| || ||| |||| |||| | ||||||| | |||||||||||||||||| |
|
|
| T |
4743578 |
tgtgaaactatgaacttgttattta-tttatacttgttctggttaacaatgattttacgagttattgttaaattatggtatgtggaatatgcggcttgag |
4743480 |
T |
|
| Q |
409 |
aaactgctacgttatttcaattttcttatt------agttacagttttgtcatcgtgcattacattttatatagtta-acaatcatttaaatcttccacc |
501 |
Q |
| |
|
| | ||||| ||| ||| ||||| ||||| |||| | |||||||||||||||| ||||||||||||||||| ||| ||| |||||||||||| |
|
|
| T |
4743479 |
atattgctatgttcttttaatttatttattggttagagttgcggttttgtcatcgtgcactacattttatatagttagtaaattattcaaatcttccacc |
4743380 |
T |
|
| Q |
502 |
ctagatt |
508 |
Q |
| |
|
|||||| |
|
|
| T |
4743379 |
atagatt |
4743373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 12 - 508
Target Start/End: Complemental strand, 4183034 - 4182529
Alignment:
| Q |
12 |
gaatatggaaatgtagaatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatatatatctgaag |
111 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| |||||||||||||||||| | | ||||||| || |||||||||||||| ||||| |
|
|
| T |
4183034 |
gaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctgagc |
4182935 |
T |
|
| Q |
112 |
atgaccaagtgctgacgtattttttcaagatggggaagtttagtttggctgtctatgattccatccatgatactttgaagattcctgcaattcaaaacaa |
211 |
Q |
| |
|
||||||||||||||| ||||||| | |||| | |||| |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||| |
|
|
| T |
4182934 |
atgaccaagtgctgatgtattttatgaagaggaggaaatttagtttggctgtctatgattccataaatgatacttataagattcctgaaattcaaggcaa |
4182835 |
T |
|
| Q |
212 |
tatccatgatc---tcgtaccagaagcctaccttccagaaatctacgttaaaagtttgatatcacctttttctcaggattaggatgtagatgttgtgcta |
308 |
Q |
| |
|
||||| | || | | | | | ||| ||||| | ||||| || | ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4182834 |
catccaagttccgatggaaggaagattctattttccatacgtctacattgagagtttgatatcacctttttttcaggattaggatgtagatgttgtgcta |
4182735 |
T |
|
| Q |
309 |
tgtgaacttatgatcttgttatttattttatgctggttctggttaccaatgacttcacgggttactgttgatttatggtgtatggaatatgcggcttgag |
408 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||| || |||||||||| |||||| || ||| |||| |||| | ||||||| | |||||||||||||||||| |
|
|
| T |
4182734 |
tgtgaaactatgaacttgttattta-tttatacttgttctggttaacaatgattttacgagttattgttaaattatggtatgtggaatatgcggcttgag |
4182636 |
T |
|
| Q |
409 |
aaactgctacgttatttcaattttcttat------tagttacagttttgtcatcgtgcattacattttatatagtta-acaatcatttaaatcttccacc |
501 |
Q |
| |
|
| | ||||| ||| ||| ||||| |||| |||| | |||||||||||||||| || |||||||||||||| ||| ||| |||||||||||| |
|
|
| T |
4182635 |
atattgctatgttcttttaatttatttatgggttagagttgcggttttgtcatcgtgcactatattttatatagttagtaaattattcaaatcttccacc |
4182536 |
T |
|
| Q |
502 |
ctagatt |
508 |
Q |
| |
|
|||||| |
|
|
| T |
4182535 |
atagatt |
4182529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 23197030 - 23197064
Alignment:
| Q |
12 |
gaatatggaaatgtagaatcttggactaaattgtt |
46 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23197030 |
gaatatggaaatgaagaatcttggactaaattgtt |
23197064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 23234901 - 23234855
Alignment:
| Q |
10 |
aagaatatggaaatgtagaatcttggactaaattgttatgtgttcct |
56 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
23234901 |
aagaatatggaaacgtagagtcttggactaaattgtttcgtgttcct |
23234855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 27755976 - 27756025
Alignment:
| Q |
250 |
tctacgttaaaagtttgatatcacctttttctcaggattaggatgtagat |
299 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
27755976 |
tctacattaaaagtttgatatcaccttgttctcgtcattaggatgtagat |
27756025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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