View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17618_low_4 (Length: 284)
Name: NF17618_low_4
Description: NF17618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17618_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 26056660 - 26056564
Alignment:
| Q |
139 |
taaatgcacccacgacgaatgcagctgttgaagtcgtgaataccagaggtacaacaataagatcaaacaatgtgcattggcaaagaccataaagagg |
235 |
Q |
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| T |
26056660 |
taaatgcacccacaacgaatgcagctcttgatgttgtgaataccagaggtacaacaataagatcaaacaaagtgcattggcacagaccataaagagg |
26056564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 26066019 - 26065923
Alignment:
| Q |
139 |
taaatgcacccacgacgaatgcagctgttgaagtcgtgaataccagaggtacaacaataagatcaaacaatgtgcattggcaaagaccataaagagg |
235 |
Q |
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| T |
26066019 |
taaatgcacccacaacgaatgcagctcttgatgttgtgaataccagaggtacaacaataagatcaaacaaagtgcattggcacagaccataaagagg |
26065923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 26056782 - 26056699
Alignment:
| Q |
48 |
gaagcataggaacttgaagttataacaagatgcagtcgaaacgaccaaacatattttagactgagtcatgcgttcactcgagga |
131 |
Q |
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| T |
26056782 |
gaagcatagaaacctgaagttataacaagatgtagtcgaaacagccaaacatattttagactgagtcatgagtttactcgagga |
26056699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 26066141 - 26066058
Alignment:
| Q |
48 |
gaagcataggaacttgaagttataacaagatgcagtcgaaacgaccaaacatattttagactgagtcatgcgttcactcgagga |
131 |
Q |
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| T |
26066141 |
gaagcatagaaacctgaagttataacaagatgtagtcgaaacagccaaacatattttagactgagtcatgagtttactcgagga |
26066058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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