View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17618_low_5 (Length: 239)
Name: NF17618_low_5
Description: NF17618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17618_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43256577 - 43256357
Alignment:
| Q |
1 |
attaagcacttattatatcatttatcgtttatgattttgcttaatctaattttatagttttagaggaaatcattaaactatttattttaataattattat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43256577 |
attaagcacttattatatcatttatcgtttatgattttgcttaatctaattttatagttgtagaggaaatgattaaactatttattttaataattattat |
43256478 |
T |
|
| Q |
101 |
acaaaacctatcgaaataatctaaagacagcttgtggacacatttaaagttatttttatagtttcatccaaatatttagacaattgattgtgttaatata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43256477 |
acaaaacctatcgaaataatctaaagacagcttgtggacacatttaaagttatttttatagtttcatccaaatatttagacaagtgattgtgttaatata |
43256378 |
T |
|
| Q |
201 |
agctcggatgcttggataaca |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
43256377 |
agctcggatgcttggataaca |
43256357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 43260153 - 43259973
Alignment:
| Q |
16 |
tatcatttatcgtttatgattttgcttaatctaattttatagttttagaggaaatcattaaactatttattttaataa-ttattatacaaaacctatcga |
114 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||| |||| ||||| ||||||||||||| |||||||| ||||| |||||||||||| || |
|
|
| T |
43260153 |
tatcatttatcgtttatgattatgcttaatctaattttacagtagtagatgaaatgattaaactatttactttaataaattattctacaaaacctatgga |
43260054 |
T |
|
| Q |
115 |
aataatctaaagacagcttgtggacacatttaaagttatttttatagtttcatccaaatatttagacaattgattgtgtta |
195 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||| |||||||| |||||| |||| |
|
|
| T |
43260053 |
aataatctaaagacaacttgtgaacacatttaaagttatctttatagtttcatccaaatacttagacaagtgattgcgtta |
43259973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University