View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17619_high_4 (Length: 353)
Name: NF17619_high_4
Description: NF17619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17619_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 352
Target Start/End: Complemental strand, 23679926 - 23679584
Alignment:
| Q |
10 |
cagagacataagaaatagttgaagtgtgaacatggttagaaacaggaccagttggtggggaaactgaggaaagcaagttagcctgttgaagcaaagccac |
109 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23679926 |
cagacacagaagaaatagttgaagtgtgaacatggttagaaacaggaccagttggtggggaaactgacgaaagcaagttagcctgttgaagcaaagccac |
23679827 |
T |
|
| Q |
110 |
aagatgatcatacttctcctgagttaaactgaacttggaatctggtgctaccacatcattggtaccaatagagttatttgtatcagaagcctcagaaaca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23679826 |
aagatgatcatacttctcctgagttaaactgaacttggaatctggtgctaccacatcattggtacaaatagagttatttgtatcagaagcctcagaaaca |
23679727 |
T |
|
| Q |
210 |
gcattgttggcagaagaattacccttattgaagttggggtgaccatgtttgagataacaaaattctatggtgtggttatatctgttacaaaaggtacaaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23679726 |
gcattgttggcagaagaattacccttattgaagttggggtgaccatgtttgagataacaaaattctatagtgtggttatatctgttacaaaaggtacaaa |
23679627 |
T |
|
| Q |
310 |
acctatcttttcctttgttagctgaagtactagaaggaccttt |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23679626 |
acctatcttttcctttgttagctgaagtactagaaggaccttt |
23679584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 3002643 - 3002310
Alignment:
| Q |
19 |
aagaaatagttgaagtgtgaacatggttagaaacaggaccagttggtggggaaactgaggaaagcaagttagcctgttgaagcaaagccacaagatgatc |
118 |
Q |
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|||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3002643 |
aagaaatagttgaagtatgaacatgattagaaataggaccagttggtggggaaactgaggaaagcaagttagcctgttgaagcaaagccacaagatgatc |
3002544 |
T |
|
| Q |
119 |
atacttctcctgagttaaactgaacttggaatctggtgctaccacatcattggtaccaatagagttatttgtatcagaagcctcagaaacagcattgttg |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3002543 |
atacttctcctgagttaaactgaacttggaatctggtgctaccacatcattggtaccaatagagttatttgtatcagaagcctcagaaacagcattgttg |
3002444 |
T |
|
| Q |
219 |
gcagaagaattacccttattgaagttggggtgaccatgtttgagataacaaaattctatggtgtggttatatctgttacaaaaggtacaaaacctatctt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
3002443 |
gcagaagaattacccttattgaagttggggtgaccatattttagataacaaaattctatagtgtggttatatctgttacaaaaggtacaaaacctatcct |
3002344 |
T |
|
| Q |
319 |
ttcctttgttagctgaagtactagaaggaccttt |
352 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
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| T |
3002343 |
ttcctttgttagctgaagtactagaagtaccttt |
3002310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 199
Target Start/End: Complemental strand, 18475288 - 18475131
Alignment:
| Q |
42 |
tggttagaaacaggaccagttggtggggaaactgaggaaagcaagttagcctgttgaagcaaagccacaagatgatcatacttctcctgagttaaactga |
141 |
Q |
| |
|
||||| |||||| ||||||||||||| || |||| ||||| |||||||| ||||| || | || || ||||||||| || || || ||||| ||| ||| |
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| T |
18475288 |
tggttggaaacaagaccagttggtggagatgctgaagaaagaaagttagcttgttggagtagagacataagatgatcttatttatcttgagtcaaattga |
18475189 |
T |
|
| Q |
142 |
acttggaatctggtgctaccacatcattggtaccaatagagttatttgtatcagaagc |
199 |
Q |
| |
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| |||||| ||| ||||||||||||| | |||||| || ||| ||||||||||||| |
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| T |
18475188 |
agttggaacctgttgctaccacatcagatgaaccaatggaattacttgtatcagaagc |
18475131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 37739826 - 37740159
Alignment:
| Q |
19 |
aagaaatagttgaagtgtgaacatggttagaaacaggaccagttggtggggaaactgaggaaagcaagttagcctgttgaagcaaagccacaagatgatc |
118 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37739826 |
aagaaatagttgaagtatgaacatgattagaaacaggaccagttggtggggaaactgaggaaagcaagttagcctgttgaagcaaagccacaagatgatc |
37739925 |
T |
|
| Q |
119 |
atacttctcctgagttaaactgaacttggaatctggtgctaccacatcattggtaccaatagagttatttgtatcagaagcctcagaaacagcattgttg |
218 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37739926 |
atacttctcctgagttaaactgaatttggaatctggtgctaccacatcattggtaccaatagagttatttgtatcagaagcctcagaaacaacattgttg |
37740025 |
T |
|
| Q |
219 |
gcagaagaattacccttattgaagttggggtgaccatgtttgagataacaaaattctatggtgtggttatatctgttacaaaaggtacaaaacctatctt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
37740026 |
gcagaagaattacccttattgaagttggggtgaccatgttttagataacaaaattctatagtgtggttatatctgttacaaaaggtacaaaacctatatt |
37740125 |
T |
|
| Q |
319 |
ttcctttgttagctgaagtactagaaggaccttt |
352 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
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| T |
37740126 |
ttcctttgttagctgaagtactagaagtaccttt |
37740159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 342
Target Start/End: Original strand, 23904392 - 23904711
Alignment:
| Q |
23 |
aatagttgaagtgtgaacatggttagaaacaggaccagttggtggggaaactgaggaaagcaagttagcctgttgaagcaaagccacaagatgatcatac |
122 |
Q |
| |
|
|||||||||||| |||||||| || |||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
23904392 |
aatagttgaagtatgaacatgattggaaacaggactagttggtggggaaactgaggaaagcaaattagcccgttgaagcaaagccacaagatgatcatac |
23904491 |
T |
|
| Q |
123 |
ttctcctgagttaaactgaacttggaatctggtgctaccacatcattggtaccaatagagttatttgtatcagaagcctcagaaacagcattgttggcag |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||| ||| || | ||||| |
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|
| T |
23904492 |
ttctcctgagttaaactgaacttggaatctggtgctaccacatcattgggaccaatggagttgtttgtatcagaagcctcagaactagctttttaggcag |
23904591 |
T |
|
| Q |
223 |
aagaattacccttattgaagttggggtgaccatgtttgagataacaaaattctatggtgtggttatatctgttacaaaaggtacaaaacctatcttttcc |
322 |
Q |
| |
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| ||||||||||| |||||||| |||||||||||||| ||||||||| ||||| || |||||| ||||||||||||| ||||||||||||| ||| || |
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| T |
23904592 |
atgaattacccttgttgaagttcgggtgaccatgtttctaataacaaaactctatagtatggttaaatctgttacaaaacgtacaaaacctatatttgcc |
23904691 |
T |
|
| Q |
323 |
tttgttagctgaagtactag |
342 |
Q |
| |
|
||||||||| || |||||| |
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|
| T |
23904692 |
cttgttagctcaattactag |
23904711 |
T |
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