View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1761_high_20 (Length: 292)
Name: NF1761_high_20
Description: NF1761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1761_high_20 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 9115 - 9380
Alignment:
| Q |
17 |
attttgaagaagatttgtgtctatgacgccaaattccaagttaccaccaacacgctgtacatattatcttgttggatgctcaacattatatttagtcatc |
116 |
Q |
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| T |
9115 |
attttgaagaagatttgtgtctatgacgccaaattccaagttaccaccaacacgctgtacatattatcttcttgaatgctcaacattatatttagtcatc |
9214 |
T |
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| Q |
117 |
tggagctatttttgcttaatgttgtatatatctaatatatggccaacttgtccattcagacaagttgatcaatatagtagctgatttttacggattcgat |
216 |
Q |
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| T |
9215 |
tggagctatttttgcttaatgttgtatataactaatatatggccaacttgtccattcagacaagttgatcaatatagtagctgatttttacggattcgat |
9314 |
T |
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| Q |
217 |
caatatatgtgttaaattacactctgatacttaagataaaaataaataaattagccttgagtattat |
283 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9315 |
caatttatgtgttaaattacactct-atacttaagataaaaataaataaatcagccttgagtattat |
9380 |
T |
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