View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1761_high_23 (Length: 251)

Name: NF1761_high_23
Description: NF1761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1761_high_23
NF1761_high_23
[»] scaffold0117 (2 HSPs)
scaffold0117 (79-181)||(17002-17104)
scaffold0117 (1-80)||(16888-16967)
[»] chr4 (3 HSPs)
chr4 (87-161)||(24154276-24154347)
chr4 (4-58)||(19147209-19147263)
chr4 (1-67)||(31647710-31647776)
[»] chr1 (5 HSPs)
chr1 (87-165)||(11643809-11643884)
chr1 (2-67)||(50127407-50127472)
chr1 (4-57)||(31884521-31884574)
chr1 (1-57)||(27742552-27742608)
chr1 (1-57)||(44109129-44109184)
[»] chr2 (4 HSPs)
chr2 (89-181)||(37039096-37039185)
chr2 (129-180)||(7475232-7475283)
chr2 (4-67)||(11610471-11610534)
chr2 (1-58)||(37913062-37913119)
[»] chr8 (2 HSPs)
chr8 (87-165)||(41429350-41429425)
chr8 (1-57)||(39065592-39065648)
[»] chr5 (4 HSPs)
chr5 (1-57)||(21052686-21052742)
chr5 (1-57)||(7609598-7609654)
chr5 (1-57)||(2611207-2611263)
chr5 (1-57)||(14863335-14863391)
[»] chr3 (9 HSPs)
chr3 (87-165)||(51972126-51972202)
chr3 (1-67)||(44291288-44291354)
chr3 (1-58)||(32720579-32720636)
chr3 (1-49)||(35322016-35322064)
chr3 (94-155)||(11354648-11354710)
chr3 (1-54)||(17109593-17109646)
chr3 (1-57)||(15671175-15671231)
chr3 (1-57)||(27143998-27144054)
chr3 (1-57)||(43862940-43862996)
[»] chr7 (4 HSPs)
chr7 (1-66)||(45907092-45907157)
chr7 (87-165)||(4909540-4909615)
chr7 (1-57)||(36636066-36636122)
chr7 (1-39)||(22035749-22035787)
[»] chr6 (2 HSPs)
chr6 (94-181)||(1083558-1083642)
chr6 (94-181)||(1086204-1086288)
[»] scaffold0034 (1 HSPs)
scaffold0034 (4-57)||(22485-22538)


Alignment Details
Target: scaffold0117 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 17002 - 17104
Alignment:
Q  79 agtgccccttatttatttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacatactctaattatct 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17002 agtgccccttatttatttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacatacactaattatct 17101  T
Q  179 ttc 181  Q
    |||    
T  17102 ttc 17104  T

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Target: scaffold0117; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 16888 - 16967
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaatagcccgggggtcctgttaaccag 80  Q
    |||||||||||  |||||||||||||||||||||| ||||||| |||||||| ||||||||| |||||  ||||||||||    
T  16888 aagtaataattatataattttttaataaaaacttatttcttttggtgcttaaccaatagcccaggggtattgttaaccag 16967  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 24154276 - 24154347
Alignment:
Q  87 ttatttatttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaa 161  Q
    ||||||||||||||||||||| |||||||||||| ||||   |||||||||||||| ||||||||||||||||||    
T  24154276 ttatttatttaccactatatccctatttatgttgcatat---ttttctgcaatatataataaatactctatgaaa 24154347  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 19147209 - 19147263
Alignment:
Q  4 taataattgcataattttttaataaaaacttacttcttttagtgcttaatcaata 58  Q
    |||||||| ||| | || |||||||||||||||||||||| ||||||||||||||    
T  19147209 taataattacattacttattaataaaaacttacttcttttggtgcttaatcaata 19147263  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 31647776 - 31647710
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaatagcccggggg 67  Q
    ||||||||||| ||| | ||||||||||||||||| ||||||| |||||||| ||||| | ||||||    
T  31647776 aagtaataattacattactttttaataaaaacttatttcttttggtgcttaaccaatacctcggggg 31647710  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 11643884 - 11643809
Alignment:
Q  87 ttatttatttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacat 165  Q
    |||||| ||||||| |||||||| |||||||||| ||||||   |||||||||||| ||||||||||||||||||||||    
T  11643884 ttatttttttaccattatatctcaatttatgttgcatattt---ttctgcaatatataataaatactctatgaaaacat 11643809  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 50127407 - 50127472
Alignment:
Q  2 agtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaatagcccggggg 67  Q
    |||||||||| ||| | ||||||||||||||||||||||||| || ||||| ||||  ||||||||    
T  50127407 agtaataattacattactttttaataaaaacttacttcttttggtacttaaccaatgccccggggg 50127472  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 31884521 - 31884574
Alignment:
Q  4 taataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 57  Q
    |||||||| ||| | |||||||||||||||||||| |||| |||||||| ||||    
T  31884521 taataattacattactttttaataaaaacttactttttttggtgcttaaccaat 31884574  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27742608 - 27742552
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 57  Q
    ||||||||||| ||| | ||||||||||||| |||||||||||  ||||||| ||||    
T  27742608 aagtaataattacattactttttaataaaaaattacttcttttgttgcttaaccaat 27742552  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 44109129 - 44109184
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 57  Q
    ||||||||||| ||| | ||||||||||||||||||||| ||| ||| |||||||||    
T  44109129 aagtaataattacattactttttaataaaaacttacttcattt-gtggttaatcaat 44109184  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 37039096 - 37039185
Alignment:
Q  89 atttatttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacatactctaattatctttc 181  Q
    |||| |||||||| |||||||||||||||||| ||||||   |||| ||||||| |||||||||| ||||||||||| | |||||| ||||||    
T  37039096 atttctttaccaccatatctctatttatgttgcatattt---ttctacaatatataataaatactttatgaaaacatccactaattctctttc 37039185  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 7475283 - 7475232
Alignment:
Q  129 ttttctgcaatataaaataaatactctatgaaaacatactctaattatcttt 180  Q
    |||||||||||||| ||||||||| ||||||||||||   ||||||||||||    
T  7475283 ttttctgcaatatataataaatacactatgaaaacattaactaattatcttt 7475232  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 11610471 - 11610534
Alignment:
Q  4 taataattgcataattttttaataaaaacttacttcttttagtgcttaatcaatagcccggggg 67  Q
    |||||||||||| | |||||||| |||||||||||| ||| |||||||| ||||  ||||||||    
T  11610471 taataattgcattactttttaatgaaaacttacttcatttggtgcttaaccaatgccccggggg 11610534  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 37913062 - 37913119
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaata 58  Q
    ||||||||||  ||| | |||||||||||||||||||||||||  ||||||| |||||    
T  37913062 aagtaataatcacattaatttttaataaaaacttacttcttttgatgcttaaccaata 37913119  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 41429350 - 41429425
Alignment:
Q  87 ttatttatttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacat 165  Q
    |||||| ||||||| |||||| |||||||||||| ||||||   |||| ||||||| ||||||||||||||||||||||    
T  41429350 ttatttctttaccattatatccctatttatgttgcatattt---ttctacaatatacaataaatactctatgaaaacat 41429425  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 39065592 - 39065648
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 57  Q
    ||||||||||  ||| ||||||||||||||| |||||||||||||||||||| ||||    
T  39065592 aagtaataatgacattattttttaataaaaatttacttcttttagtgcttaaccaat 39065648  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 21052686 - 21052742
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 57  Q
    ||||||||||| ||| ||||||||||||||||||||||||||| |||||||| ||||    
T  21052686 aagtaataattacatgattttttaataaaaacttacttcttttggtgcttaaccaat 21052742  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7609598 - 7609654
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 57  Q
    ||||||||||| ||| | ||||||||||||||||||||||||| |||||||| ||||    
T  7609598 aagtaataattacattactttttaataaaaacttacttcttttggtgcttaaccaat 7609654  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2611207 - 2611263
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 57  Q
    ||||||||||| ||| | ||||||||||||||||||||| ||| |||||||| ||||    
T  2611207 aagtaataattacattactttttaataaaaacttacttcatttggtgcttaaccaat 2611263  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14863391 - 14863335
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 57  Q
    ||||||||||| ||| | |||||||||||||||||||| |||| |||||||| ||||    
T  14863391 aagtaataattacattaatttttaataaaaacttactttttttggtgcttaaccaat 14863335  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 51972202 - 51972126
Alignment:
Q  87 ttatttatttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacat 165  Q
    |||||| | |||||||||||| ||||||||||||||| |||| ||| ||||||||| ||||||||||||| ||||||||    
T  51972202 ttatttctgtaccactatatccctatttatgttgtat-ttta-tttatgcaatatataataaatactctaggaaaacat 51972126  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 44291288 - 44291354
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaatagcccggggg 67  Q
    ||||||||||| ||| | ||||||||||| ||||||||||||| |||||||| ||||  ||||||||    
T  44291288 aagtaataattacattactttttaataaatacttacttcttttggtgcttaaccaatgccccggggg 44291354  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 32720579 - 32720636
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaata 58  Q
    |||||||||||  || ||||||||||||||||||||||  |||||||||||| |||||    
T  32720579 aagtaataattatattattttttaataaaaacttacttaatttagtgcttaaccaata 32720636  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35322064 - 35322016
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgct 49  Q
    ||||||||||| ||| | ||||||||||||||||||||||||| |||||    
T  35322064 aagtaataattacattactttttaataaaaacttacttcttttggtgct 35322016  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 11354648 - 11354710
Alignment:
Q  94 tttaccactatatctctatttatgttgtata-tttattttctgcaatataaaataaatactct 155  Q
    |||||||||||||| |||||||||||| ||| ||| |||| || |||||| ||||||||||||    
T  11354648 tttaccactatatccctatttatgttgcatatttttttttttgtaatatataataaatactct 11354710  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17109593 - 17109646
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatc 54  Q
    ||||||||||| ||||| ||||||||||||| ||||||  ||||||| ||||||    
T  17109593 aagtaataattacataactttttaataaaaatttactttatttagtgtttaatc 17109646  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 15671175 - 15671231
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 57  Q
    ||||||||||| ||| | ||||||||||||||||||||| ||| || ||||| ||||    
T  15671175 aagtaataattacattactttttaataaaaacttacttcatttggttcttaaccaat 15671231  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27144054 - 27143998
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 57  Q
    ||||||||||| ||| ||||||||||||||||||| ||| |||  ||||||| ||||    
T  27144054 aagtaataattacattattttttaataaaaacttagttcatttgttgcttaaccaat 27143998  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 43862996 - 43862940
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 57  Q
    ||||||||||| ||| | ||||||||||||||||||||| ||| | |||||| ||||    
T  43862996 aagtaataattacattactttttaataaaaacttacttcatttggggcttaaccaat 43862940  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 45907092 - 45907157
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaatagcccgggg 66  Q
    ||||||||||| ||| | |||||||||||||||||||||||||  ||||||| ||||| |||||||    
T  45907092 aagtaataattacattactttttaataaaaacttacttctttttatgcttaaccaatatcccgggg 45907157  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 4909540 - 4909615
Alignment:
Q  87 ttatttatttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacat 165  Q
    |||||| |||||||||||||| |||||||| ||| |||   ||||||||||||||| |||||||||||  |||||||||    
T  4909540 ttatttctttaccactatatccctatttattttgcata---attttctgcaatatataataaatactcactgaaaacat 4909615  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 36636066 - 36636122
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 57  Q
    ||||||||||| ||| ||||||||||||||||||||||  ||| |||||||| ||||    
T  36636066 aagtaataattacattattttttaataaaaacttactttatttggtgcttaaccaat 36636122  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22035787 - 22035749
Alignment:
Q  1 aagtaataattgcataattttttaataaaaacttacttc 39  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  22035787 aagtaataattacattattttttaataaaaacttacttc 22035749  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 1083642 - 1083558
Alignment:
Q  94 tttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacatactctaattatctttc 181  Q
    ||||||| | |||| |||||||||||| ||||||   |||||||||||  |||||||||||||||||||||| | |||||| ||||||    
T  1083642 tttaccattgtatccctatttatgttgcatattt---ttctgcaatatttaataaatactctatgaaaacatccactaattctctttc 1083558  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 1086288 - 1086204
Alignment:
Q  94 tttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacatactctaattatctttc 181  Q
    ||||||| | |||| |||||||||||| ||||||   |||||||||||  |||||||||||||||||||||| | |||||| ||||||    
T  1086288 tttaccattgtatccctatttatgttgcatattt---ttctgcaatatttaataaatactctatgaaaacatccactaattctctttc 1086204  T

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Target: scaffold0034 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 22485 - 22538
Alignment:
Q  4 taataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 57  Q
    |||||||| ||| | | ||||||||||||||||||||||| |||||||| ||||    
T  22485 taataattacattactctttaataaaaacttacttcttttggtgcttaaccaat 22538  T

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