View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1761_high_5 (Length: 380)
Name: NF1761_high_5
Description: NF1761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1761_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 29198311 - 29197956
Alignment:
| Q |
11 |
atgaaatagtaccatagtattggtatgactccaaaaaaggaggttaagagatttatgactttaggtatacatcacaatagtatatatgtgcattaaaatt |
110 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29198311 |
atgaaatagtaccacagtattggtatgactccaaaaaaggaggttaagagatttatgactttaggtatacatcacaatagtatatatgtgcattaaagtt |
29198212 |
T |
|
| Q |
111 |
tgcttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataacgctagggtaattccaccaaacaggaatacc |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29198211 |
tgcttcatcaatctttgacaagcatacagaaaaattaaataatgtaaaaaaatacaaatccttaaataacgctagggtaattccaccaaacaggaatacc |
29198112 |
T |
|
| Q |
211 |
aataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactctttttatctgccgttgttttatttttcaccacggta |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29198111 |
aataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactctttttatctgccgttgttttatttttcaccacggta |
29198012 |
T |
|
| Q |
311 |
accgatcttttctccggcataaccaccctcacaccaaaatgaataactccattttg |
366 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29198011 |
accgatcttttctccggcataaccaccctcacaccaaaatgaataactccattttg |
29197956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 172 - 366
Target Start/End: Complemental strand, 12271428 - 12271234
Alignment:
| Q |
172 |
ttaaataacgctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataa |
271 |
Q |
| |
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|||||||| | ||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
12271428 |
ttaaataatgttagggtaattccaccaaacaggaataccaataacagcaccattagagttcttcgtaccaacatcaattccagttaaccggtcaccataa |
12271329 |
T |
|
| Q |
272 |
ctctttttatctgccgttgttttatttttcaccacggtaaccgatcttttctccggcataaccaccctcacaccaaaatgaataactccattttg |
366 |
Q |
| |
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|||||| ||| ||| | || || | | |||||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
12271328 |
ctctttccatccgccaccggttgcttctccgccacggtaaccgttctttgctctggcacaaccaccctcacaccaaaatgaataactccattttg |
12271234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 163 - 366
Target Start/End: Complemental strand, 12288103 - 12287900
Alignment:
| Q |
163 |
tacaaatccttaaataacgctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccga |
262 |
Q |
| |
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|||||||| ||||| || || ||||||||||||| || |||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12288103 |
tacaaatctttaaacaatgccggggtaattccacctaaaaggaataccaataacacctccattagagttcttggtaccaacatcaattccagttaaccga |
12288004 |
T |
|
| Q |
263 |
tcaccataactctttttatctgccgttgttttatttttcaccacggtaaccgatcttttctccggcataaccaccctcacaccaaaatgaataactccat |
362 |
Q |
| |
|
|||||||||||||| ||| ||| ||||| |||| | |||| ||||||||||||| ||| ||| ||||||| |||||||||||||||||||||||| |
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| T |
12288003 |
tcaccataactcttcccatccgccagtgtttccttttccgccaccgtaaccgatctttcctctggcgcaaccaccttcacaccaaaatgaataactccat |
12287904 |
T |
|
| Q |
363 |
tttg |
366 |
Q |
| |
|
|||| |
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|
| T |
12287903 |
tttg |
12287900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 81 - 366
Target Start/End: Complemental strand, 12257512 - 12257230
Alignment:
| Q |
81 |
atcacaatagtatatatgtgcattaaaatttgcttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataac |
180 |
Q |
| |
|
||||||||| ||||| ||||||| |||||| |||||| ||||||||||||| || || |||||| ||||||| | || |||| |||||||| |
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| T |
12257512 |
atcacaataatatat-tgtgcatcaaaattgacttcattaatctttgacaagaatgca-aaaaatcaaataatataaa----tataaatatttaaataat |
12257419 |
T |
|
| Q |
181 |
gctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactcttttta |
280 |
Q |
| |
|
| | |||||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||| | |
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|
| T |
12257418 |
gtttgggtaattccaccaaaacggaataccaatagcaacaccattagagtccttggtaccaacatccattccagttaaccgaccaccataattctttcca |
12257319 |
T |
|
| Q |
281 |
tctgccgttgttttatttt---tcaccacggtaaccgatcttttctccggcataaccaccctcacaccaaaatgaataactccattttg |
366 |
Q |
| |
|
|| || || | |||| | |||||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
12257318 |
tccgcgacagtctgcttttcaaccgccacggtagccgatgttttctccggcacaaccaccctcacactgaaatgaataactccattttg |
12257230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 81 - 366
Target Start/End: Complemental strand, 12264904 - 12264622
Alignment:
| Q |
81 |
atcacaatagtatatatgtgcattaaaatttgcttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataac |
180 |
Q |
| |
|
||||||||| ||||| ||||||| |||||| |||||| ||||||||||||| || || |||||| ||||||| | || |||| |||||||| |
|
|
| T |
12264904 |
atcacaataatatat-tgtgcatcaaaattgacttcattaatctttgacaagaatgca-aaaaatcaaataatataaa----tataaatatttaaataat |
12264811 |
T |
|
| Q |
181 |
gctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactcttttta |
280 |
Q |
| |
|
| | |||||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||| | |
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|
| T |
12264810 |
gtttgggtaattccaccaaaacggaataccaatagcaacaccattagagtccttggtaccaacatccattccagttaaccgaccaccataattctttcca |
12264711 |
T |
|
| Q |
281 |
tctgccgttgttttatttt---tcaccacggtaaccgatcttttctccggcataaccaccctcacaccaaaatgaataactccattttg |
366 |
Q |
| |
|
|| || || | |||| | |||||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
12264710 |
tccgcgacagtctgcttttcaaccgccacggtagccgatgttttctccggcacaaccaccctcacactgaaatgaataactccattttg |
12264622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 117 - 366
Target Start/End: Complemental strand, 12283297 - 12283050
Alignment:
| Q |
117 |
atcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataacgctagggtaattccaccaaacaggaataccaataac |
216 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||| |||||||| |||||||| | |||||||||||||||||| |||| ||||||| | |
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|
| T |
12283297 |
atcaatctttgacaagcatgcaaaaaaattaaataatgtaaaaaa-tacaaatc-ttaaataatgttagggtaattccaccaaaagggaaaaccaatagc |
12283200 |
T |
|
| Q |
217 |
aacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactctttttatctgccgttgttttatttttcaccacggtaaccgat |
316 |
Q |
| |
|
||||| |||| |||||||| ||||||||| |||||||||||||| ||||| || ||||| || | |||| || | | |||||||||| ||| |
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|
| T |
12283199 |
aacaccattacagttcttgacaccaacatccattccagttaaccggccaccacaattctttccatgcatcaccgtttgcttctccgccacggtaactgat |
12283100 |
T |
|
| Q |
317 |
cttttctccggcataaccaccctcacaccaaaatgaataactccattttg |
366 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
12283099 |
ctttcctccggcacaaccaccctcacactgaaatgaataactccattttg |
12283050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 114 - 366
Target Start/End: Complemental strand, 12267577 - 12267324
Alignment:
| Q |
114 |
ttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataacgctagggtaattccaccaaacaggaataccaat |
213 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||||||||| |||||||| |||||||| | ||||||||||||| |||| |||| |||||| |
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|
| T |
12267577 |
ttcatcaatctttaacaagcatgcaaaaaaatgaaataatgtaaaaaa-tacaaatc-ttaaataatgttagggtaattccatcaaaagggaaaaccaat |
12267480 |
T |
|
| Q |
214 |
aacaacactattagagttcttggtaccaaca---tcaattccagttaaccgatcaccataactctttttatctgccgttgttttatttttcaccacggta |
310 |
Q |
| |
|
| |||||| ||||||||||||| ||||||| || |||||||||||||| ||||| || ||||| || | |||| || | | |||||||| |
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|
| T |
12267479 |
agcaacaccattagagttcttgacaccaacaatatccattccagttaaccggccaccacaattctttccatgcatcaccgtttgcttctccgccacggta |
12267380 |
T |
|
| Q |
311 |
accgatcttttctccggcataaccaccctcacaccaaaatgaataactccattttg |
366 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||||||||||| |||||||| |
|
|
| T |
12267379 |
accgatctttcctccggcacaaccaccctcacactaaaatgaataaccccattttg |
12267324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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