View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1761_high_6 (Length: 367)
Name: NF1761_high_6
Description: NF1761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1761_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 7197831 - 7198096
Alignment:
| Q |
11 |
caaaggatgatgtactaagctatgattcttcaagcagaaacagccatgtcagcacaggaagaagtagccatgtcagcactggaagaagtagccatgtcag |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7197831 |
caaaagatgatgtactaagctatgattcttcaagcagaaacagccatgtcagcactggaagaagtagccatgtcagcactggaagaagtagccatgtcag |
7197930 |
T |
|
| Q |
111 |
catagtaacaataagtggaaaacctattgaaggaacagacacaaatgctgtttgtcctttacaaggttatttgtttggaacagctgttgaaatgtctgaa |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7197931 |
catagtaacaataagtggaaaaccaattgaaggaacagacacaaatgctgtttgtcctttacaaggttatttgtttggaacagctgttgaaatgtctgaa |
7198030 |
T |
|
| Q |
211 |
acagcagttacaagtgttggtaagaaagaacataggacttcacttggtgaactttttcagagaagt |
276 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7198031 |
acagcagttactagtgttggtaagaaagaacataggacttcacttggtgaactttttcagagaagt |
7198096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University