View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1761_high_9 (Length: 349)
Name: NF1761_high_9
Description: NF1761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1761_high_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 41918332 - 41918680
Alignment:
| Q |
1 |
ccgtttgcaaagggcaagagatcaaaaagttttgttacgaagagaaaatgttggacacaattttgggcggaaggaaattctacaaccagccgaaaaatga |
100 |
Q |
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| T |
41918332 |
ccgtttgcaaagggccagagatcaaaaagttttgttacgaagagaaaatgttggacacaattttgggcagaaggaaattctacaaccagccgaaaaatga |
41918431 |
T |
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| Q |
101 |
gatctttaatcaagaaaattatttccttgaagnnnnnnntgcatcgaaagaaaaataagagagacgtccgcaaaaagtcaggggaattagttctttataa |
200 |
Q |
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| T |
41918432 |
gatctttaatcaagaaaattatttccttgaagaaaaaaatgcatcgaaagaaaaataagagagatgtccgcaaaaagtcaggggaattagttctttataa |
41918531 |
T |
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| Q |
201 |
tcgaccatcagcagaagttgaagtaatgcttgacgaagagacattacgagtatggaatttactcgttgttgaaaacaaacatgaagagaatgatgaacat |
300 |
Q |
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| T |
41918532 |
tcgaccatcagcagaagttgaagtaatgcttgacgaagagacattacgagtatggaatttactcgttgttgaaaacaaacatgaagagaatgatgaacat |
41918631 |
T |
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| Q |
301 |
aagaggaggtattggtagatgattcgaaaactctaccataaaatggtta |
349 |
Q |
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| T |
41918632 |
aagaggaggtattgggagatgataagaaaactctaccataaaatggtta |
41918680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 315
Target Start/End: Original strand, 1687211 - 1687525
Alignment:
| Q |
4 |
tttgcaaagggcaagagatcaaaaagttttgttacgaagagaaaatgttggacacaattttgggcggaaggaaattctacaac---cagccgaaaaatga |
100 |
Q |
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| T |
1687211 |
tttgcaaagggtagtagatcaaaaacttttattaggaagaggaaatgttggaaagatttctacgtagaaggaaattctactacaatcagccgaaaaatga |
1687310 |
T |
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| Q |
101 |
gatctttaatcaagaaaattatttccttgaagnnnnnnntgcatcgaaagaaaaataagagagacgtccgcaaaaagtcaggggaattagttctttataa |
200 |
Q |
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| T |
1687311 |
aaactataatcaagaagattatttcctcaaataaaaaaatacatcgaaaggcaaataagagaaatgtccgtaaaaaatcaggagaattagttctttatga |
1687410 |
T |
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| Q |
201 |
tcgaccatcagcagaagttgaagtaatgcttgacgaagagacattacgagtatggaatttactcgttgttgaaaacaaacatgaagagaatgatgaacat |
300 |
Q |
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| T |
1687411 |
acggccattgttgaaagtcaatgtaaagtttgacgaagagacattacgtgtatggaacttgctcgttgctgaaaacaaacatgatgagaaagatgaacat |
1687510 |
T |
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| Q |
301 |
aagaggaggtattgg |
315 |
Q |
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| T |
1687511 |
aagaggaggtattgg |
1687525 |
T |
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