View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1761_low_13 (Length: 325)
Name: NF1761_low_13
Description: NF1761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1761_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 6721159 - 6721454
Alignment:
| Q |
18 |
aaagagatgtacttagtaacttctatcatttttacataccaatatatcattatgctgcaaaaaatgtaggaaattttcctattttctacgtaaagttttc |
117 |
Q |
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| T |
6721159 |
aaagagatgtacttagtaacttctatcatttttacataccaatatatcattatgctgcaaaaaatgtagggaattttcctattttctacgtaaagttttc |
6721258 |
T |
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| Q |
118 |
atttttatggtcattttacaccaaactacatcgtcattcaaacaaatttagcagtgtnnnnnnnnnnnnntggggaaattattaggttacaattgttgtt |
217 |
Q |
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| T |
6721259 |
atttttatggtcattttacaccaaactacatcatcattcaaacaaatttagcagtgtgaaaagaaaaaaatagggaaaatattaagttacaattgttgtt |
6721358 |
T |
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| Q |
218 |
ttttggtttcctctattttgagttgaatgaaatattcaacatttttcttgtatgcatcgtattgacataccttattatgttttctcaccacaggtt |
313 |
Q |
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| T |
6721359 |
ttttggtttcctctattttgagttgaatgaaatatttaacatttttcttatctgcatcgtattgacataccttattatgttttctcaccagaggtt |
6721454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 282
Target Start/End: Original strand, 6716619 - 6716687
Alignment:
| Q |
216 |
ttttttggtttcctct--attttgagttgaatgaaatattcaacatttttcttgtatgcatcgtattga |
282 |
Q |
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| T |
6716619 |
ttttttggtttcctctctattttgagttgagtgaaatatttaacatttttcatgtatgcaatgtattga |
6716687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 6715891 - 6715958
Alignment:
| Q |
17 |
aaaagagatgtacttagtaacttctatcatttttacataccaatatatcattatgctgcaaaaaatgta |
85 |
Q |
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| T |
6715891 |
aaaagggatgtgcttagtaatttctattatttttactt-ccaatatatcattatgctggaagaaatgta |
6715958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 6721754 - 6721791
Alignment:
| Q |
216 |
ttttttggtttcctctattttgagttgaatgaaatatt |
253 |
Q |
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| T |
6721754 |
ttttttggtttcctctttttttagttgaatgaaatatt |
6721791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 207 - 283
Target Start/End: Complemental strand, 42230689 - 42230614
Alignment:
| Q |
207 |
caattgttgttttttggtttcctctattttgagttgaatgaaatattcaacatttttcttgtatgcatcgtattgac |
283 |
Q |
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| T |
42230689 |
caattgttattttttggtttcctttgttttgagttgaatg-aatatttaacatttttcatgtatgcatcgtattgac |
42230614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 42230440 - 42230325
Alignment:
| Q |
35 |
aacttctatcatttttacataccaatatatcattatgctgcaaaa-aatgtaggaaattttcctattttctacgtaaagttttcatttttatggtcattt |
133 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||| |||||||| ||| || ||| ||| ||| |||| |||| ||||| | |||||| |
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| T |
42230440 |
aacttctatcatttttatataccaatatatgattatgctgcaaaacaatgtagggaatatttctagtttgtacttaaatttttgtttttttggttcattt |
42230341 |
T |
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| Q |
134 |
tacaccaaactacatc |
149 |
Q |
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|||||| || |||||| |
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| T |
42230340 |
tacacccaaatacatc |
42230325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 42231130 - 42231075
Alignment:
| Q |
26 |
gtacttagtaacttctatcatttttacataccaatatatcattatgctgcaaaaaa |
81 |
Q |
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|||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
42231130 |
gtacttagaaacttctatcatttttacatacaaatatatgattatgctgcaaaaaa |
42231075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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