View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1761_low_15 (Length: 319)

Name: NF1761_low_15
Description: NF1761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1761_low_15
NF1761_low_15
[»] chr2 (3 HSPs)
chr2 (18-303)||(7240498-7240783)
chr2 (147-180)||(9556247-9556280)
chr2 (147-180)||(10884550-10884583)
[»] chr6 (2 HSPs)
chr6 (135-179)||(20370880-20370924)
chr6 (139-179)||(20351149-20351189)
[»] chr8 (6 HSPs)
chr8 (128-179)||(1433538-1433589)
chr8 (140-179)||(27028833-27028872)
chr8 (140-181)||(25097388-25097429)
chr8 (147-180)||(26473781-26473814)
chr8 (147-179)||(10075580-10075612)
chr8 (140-180)||(25097394-25097434)
[»] chr7 (3 HSPs)
chr7 (133-175)||(27548258-27548300)
chr7 (142-179)||(529379-529416)
chr7 (139-179)||(48917375-48917415)
[»] chr3 (2 HSPs)
chr3 (131-177)||(25964436-25964482)
chr3 (147-179)||(16790407-16790439)
[»] chr4 (1 HSPs)
chr4 (134-179)||(1706618-1706663)
[»] chr1 (1 HSPs)
chr1 (147-180)||(25479589-25479622)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 7240783 - 7240498
Alignment:
Q  18 ttaaagggagttacagcagcagctccaacagtaagtgttattttcaatttttattaattaaacaattacaagttttatcaaccaagttcaagcatgtgag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7240783 ttaaagggagttacagcagcagctccaacagtaagtgttattttcaatttttattaattaaacaattacaagttttatcaaccaagtccaagcatgtgag 7240684  T
Q  118 attcgtaaagttatgtaagctttaagctgttttcataagctatctaggatagcttatgaaaactctatgaaaatggcctatggacattttagaagctctt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  7240683 attcgtaaagttatgtaagctttaagctgttttcataagctatctaggatagcttatgaaaactatctgaaaatggcctatggacattttagaagctctt 7240584  T
Q  218 cacaatttcataggctctatcaaatggtctttcaagagcttatgtccataaatatgctaaaataagtcgattcaaatagaccctat 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7240583 cacaatttcataggctctatcaaatggtctttcaagagcttatgtccatagatatgctaaaataagtcgattcaaatagaccctat 7240498  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 9556280 - 9556247
Alignment:
Q  147 ttttcataagctatctaggatagcttatgaaaac 180  Q
    |||||||||||| |||||||||||||||||||||    
T  9556280 ttttcataagctttctaggatagcttatgaaaac 9556247  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 10884550 - 10884583
Alignment:
Q  147 ttttcataagctatctaggatagcttatgaaaac 180  Q
    |||||||||||| |||||||||||||||||||||    
T  10884550 ttttcataagctctctaggatagcttatgaaaac 10884583  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 20370880 - 20370924
Alignment:
Q  135 agctttaagctgttttcataagctatctaggatagcttatgaaaa 179  Q
    |||||||||||||||||||| |||||||||||  |||||||||||    
T  20370880 agctttaagctgttttcatatgctatctaggagtgcttatgaaaa 20370924  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 20351149 - 20351189
Alignment:
Q  139 ttaagctgttttcataagctatctaggatagcttatgaaaa 179  Q
    ||||| |||||||||||||||||| ||||||||||| ||||    
T  20351149 ttaagatgttttcataagctatctcggatagcttataaaaa 20351189  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 1433538 - 1433589
Alignment:
Q  128 ttatgtaagctttaagctgttttcataagctatctaggatagcttatgaaaa 179  Q
    |||| |||||||||||| ||||||||||||||||  ||| ||||||||||||    
T  1433538 ttatttaagctttaagcagttttcataagctatcctggagagcttatgaaaa 1433589  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 27028833 - 27028872
Alignment:
Q  140 taagctgttttcataagctatctaggatagcttatgaaaa 179  Q
    ||||||||||||||||||||||| ||| ||||||||||||    
T  27028833 taagctgttttcataagctatcttggagagcttatgaaaa 27028872  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 25097388 - 25097429
Alignment:
Q  140 taagctgttttcataagctatctaggatagcttatgaaaact 181  Q
    ||||||||||||||||||||||  ||| ||||||||||||||    
T  25097388 taagctgttttcataagctatcctggagagcttatgaaaact 25097429  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 26473781 - 26473814
Alignment:
Q  147 ttttcataagctatctaggatagcttatgaaaac 180  Q
    |||||||||||| |||||||||||||||||||||    
T  26473781 ttttcataagctctctaggatagcttatgaaaac 26473814  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 10075580 - 10075612
Alignment:
Q  147 ttttcataagctatctaggatagcttatgaaaa 179  Q
    |||||||||||| ||||||||||||||||||||    
T  10075580 ttttcataagctctctaggatagcttatgaaaa 10075612  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 25097434 - 25097394
Alignment:
Q  140 taagctgttttcataagctatctaggatagcttatgaaaac 180  Q
    ||||| ||||||||||||| || ||||||||||||||||||    
T  25097434 taagcagttttcataagctctccaggatagcttatgaaaac 25097394  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 27548258 - 27548300
Alignment:
Q  133 taagctttaagctgttttcataagctatctaggatagcttatg 175  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||    
T  27548258 taagctataagctgttttcataagctatcttggataacttatg 27548300  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 529379 - 529416
Alignment:
Q  142 agctgttttcataagctatctaggatagcttatgaaaa 179  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  529379 agctgttttcataagctatcttggagagcttatgaaaa 529416  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 48917415 - 48917375
Alignment:
Q  139 ttaagctgttttcataagctatctaggatagcttatgaaaa 179  Q
    ||||| |||||||||||||||||| ||| ||||||||||||    
T  48917415 ttaagttgttttcataagctatcttggagagcttatgaaaa 48917375  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 25964436 - 25964482
Alignment:
Q  131 tgtaagctttaagctgttttcataagctatctaggatagcttatgaa 177  Q
    |||||||| ||||||||||||||||||||||  ||| ||||||||||    
T  25964436 tgtaagctataagctgttttcataagctatcccggaaagcttatgaa 25964482  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 16790439 - 16790407
Alignment:
Q  147 ttttcataagctatctaggatagcttatgaaaa 179  Q
    |||||||||||||||| ||||||||||||||||    
T  16790439 ttttcataagctatcttggatagcttatgaaaa 16790407  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 1706618 - 1706663
Alignment:
Q  134 aagctttaagctgttttcataagctatctaggatagcttatgaaaa 179  Q
    ||||| |||||||||||||||| |||||| ||| ||||||||||||    
T  1706618 aagctataagctgttttcataaactatcttggacagcttatgaaaa 1706663  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 25479622 - 25479589
Alignment:
Q  147 ttttcataagctatctaggatagcttatgaaaac 180  Q
    |||||||||||| |||||||||||||||||||||    
T  25479622 ttttcataagctctctaggatagcttatgaaaac 25479589  T

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