View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1761_low_17 (Length: 307)
Name: NF1761_low_17
Description: NF1761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1761_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 197997 - 198272
Alignment:
| Q |
19 |
tgctttccttgagaattttggagcttgaacggaacctttagcgtcagatgcttttcagcaaaactagaaggaacatactgcacaatggaggagaggtcaa |
118 |
Q |
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| T |
197997 |
tgctttccttgagaattttggagcttgaacggaacctttagcgtcagatacttttcagcaaaaatagaaggaacatactgcacaatggag---aggtcaa |
198093 |
T |
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| Q |
119 |
tgcaaatggaaccataaatataaatcataccgtaactttaaaaaccagaaagtaattaaaatccttactgcataaaagcccctgttggattttgaataaa |
218 |
Q |
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| T |
198094 |
tgcaaatggaaccataaatataaatcataccgtaactttaaaaaccagaaagtaattaaaatccttactgcataaaagcccctgttggattttgaataaa |
198193 |
T |
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| Q |
219 |
aatatgggttttttgggttgaattcactggcagcacaattttctcttttggaagcagagttgggaccctttatcctttg |
297 |
Q |
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| T |
198194 |
aatatgggttttttgggttgaattcactggcagcacaattttctcttttggaagcagagttgggaccctttatcctttg |
198272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 297
Target Start/End: Complemental strand, 203966 - 203684
Alignment:
| Q |
21 |
ctttccttgagaattttggagcttgaacggaacctttagcgtcagatgcttttcagcaaaactagaaggaacatactgcacaatggaggagaggtcaatg |
120 |
Q |
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| T |
203966 |
ctttccttgatagttttggagcatgaacggaaccattagcatcaaatactttttagcaaaaccagaaggaacatactacagaatgaatgagaagtcaatt |
203867 |
T |
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| Q |
121 |
caaatggaaccataa--atataaatcataccgtaactttaaaaaccagaaa----gtaattaaaatccttactgcataaaagcccctgttggattttgaa |
214 |
Q |
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| T |
203866 |
caaacaacaccgtaagtatataactcaaacattaactttaaaaaccaaaaaactagaaagtgaaatcctcaccgcaaaaatgcccttgatggattttgaa |
203767 |
T |
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| Q |
215 |
taaaaatatgggttttttgggttgaattcactggcagcacaattttctcttttggaagcagagttgggaccctttatcctttg |
297 |
Q |
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| T |
203766 |
tgaaaataagggttttttgggttgaattcaccgacagcacaatttgctcttttggaatcagagttaggaccctttatgctttg |
203684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 225857 - 225949
Alignment:
| Q |
19 |
tgctttccttgagaattttggagcttgaacggaacctttagcgtcagatgcttttcagcaaaactagaaggaacatactgcacaatggaggag |
111 |
Q |
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| T |
225857 |
tgctttccttgataattttggagcatgaacggaacatttggcttcagatgctccttagcaaattcaccaggaacatactacacaatggaggag |
225949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 6904517 - 6904801
Alignment:
| Q |
19 |
tgctttccttgagaattttggagcttgaacggaacctttagcgtcagatgcttttcagcaaaactagaaggaacatactgcacaatggaggagaggtcaa |
118 |
Q |
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|||||||||||| | ||||||||| ||||| ||||| ||||| ||| || ||||| |||||||| |||||||||||||| || || | | |||| ||||| |
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| T |
6904517 |
tgctttccttgatagttttggagcatgaacagaaccattagcatcaaatactttttagcaaaaccagaaggaacatactacagaaagaatgagaagtcaa |
6904616 |
T |
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| Q |
119 |
tgcaaatggaaccataaatataaa--tcataccgtaactttaaaaaccagaaa----gtaattaaaatccttactgcataaaagcccctgttggattttg |
212 |
Q |
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| T |
6904617 |
ttcaaacaacaccgtaagtaaatacctcaaacattaactttaaaaaccaaaaaactagaaaatgaaatcctcaccgcaaaaatgcccttgatggattttg |
6904716 |
T |
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| Q |
213 |
aataaaaatatgggttttttgggttgaattcactggcagcacaattttctcttttggaagcagagttgggaccctttatcctttg |
297 |
Q |
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||| |||||| |||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||||||| ||||| |
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| T |
6904717 |
aatgaaaataagggttttttgggttgaattcaccggcagcacaatttgctcttttggaatcagagttaggaccctttatgctttg |
6904801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 6903260 - 6903305
Alignment:
| Q |
208 |
ttttgaataaaaatatgggttttttgggttgaattcactggcagca |
253 |
Q |
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| T |
6903260 |
ttttgaacaaaaataagggttttttggattgaattcattggcagca |
6903305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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