View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1761_low_20 (Length: 294)

Name: NF1761_low_20
Description: NF1761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1761_low_20
NF1761_low_20
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-279)||(128634-128914)
[»] chr7 (8 HSPs)
chr7 (6-277)||(781343-781617)
chr7 (188-269)||(11098604-11098685)
chr7 (1-52)||(781684-781735)
chr7 (6-44)||(360408-360446)
chr7 (7-43)||(781636-781672)
chr7 (7-43)||(781748-781784)
chr7 (1-29)||(781847-781875)
chr7 (1-41)||(18308219-18308259)
[»] chr6 (1 HSPs)
chr6 (188-269)||(17998644-17998725)
[»] chr8 (2 HSPs)
chr8 (188-268)||(36283637-36283717)
chr8 (190-235)||(31710416-31710461)
[»] chr4 (11 HSPs)
chr4 (188-279)||(10755787-10755878)
chr4 (188-279)||(10969556-10969647)
chr4 (1-64)||(36542240-36542303)
chr4 (1-64)||(36542454-36542517)
chr4 (1-64)||(1677482-1677545)
chr4 (1-64)||(1684010-1684073)
chr4 (6-64)||(36542640-36542698)
chr4 (1-53)||(1677538-1677590)
chr4 (1-53)||(1684066-1684118)
chr4 (188-279)||(723300-723391)
chr4 (189-229)||(12325892-12325932)
[»] chr3 (2 HSPs)
chr3 (196-279)||(806788-806871)
chr3 (190-235)||(17594919-17594964)
[»] scaffold0130 (1 HSPs)
scaffold0130 (190-235)||(17293-17338)
[»] scaffold0044 (1 HSPs)
scaffold0044 (1-41)||(60122-60162)
[»] chr5 (1 HSPs)
chr5 (183-235)||(11203641-11203693)


Alignment Details
Target: scaffold0010 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 128914 - 128634
Alignment:
Q  1 ttgaggaaaatttcttgcccaatatattttgagaaaatatattcgcactttttaacttgaagaagaattttcatctaataaattttttatagacatag-- 98  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||      
T  128914 ttgaggaaaatttcttgcccaatatattttgagaaaatatatttgcactttttaatttgaagaagaattttcatctaataatttttttatagacatagag 128815  T
Q  99 ttgttgactgaattttccagttgtttttgttatgctatttatgttcggtgtagtctggatattgatgacataggaggacctgaccaaccgaggagctcaa 198  Q
    || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||| |||||||||||||    
T  128814 tttttgactgaattttctagttgtttttgttatgctatttatgttcggtgtagtctggatattaatgatgtaggaggacctgaccagccgaggagctcaa 128715  T
Q  199 ttcatcaccatcatagtcatccttatgaacatgcggagatgaatacactatggtttctcttgatgccaacaacaccatgga 279  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||    
T  128714 ttcatcaccatcatagtcatccttatgaacatgcagagatgaatacattatggtttctcttgatgccaacaataccatgga 128634  T

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Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 6 - 277
Target Start/End: Complemental strand, 781617 - 781343
Alignment:
Q  6 gaaaatttcttgcccaatatattttgagaaaatatattcgcactttttaacttgaagaagaattttcatctaataaattttttatagacatag--ttgtt 103  Q
    ||||||||||||||||||||||||| ||||||||||||  |||||||| | ||||||||||||||||||||||||||  || |||||||||||  |||||    
T  781617 gaaaatttcttgcccaatatattttaagaaaatatatttacacttttttagttgaagaagaattttcatctaataaaaattgtatagacatagagttgtt 781518  T
Q  104 -gactgaattttccagttgtttttgttatgctatttatgttcggtgtagtctggatattgatgacataggaggacctgaccaaccgaggagctcaattca 202  Q
     |||||||||||||||| || |||||| ||||||||||||||| ||||  ||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  781517 tgactgaattttccagtggtatttgttgtgctatttatgttcgatgtaacctggatattgatgacgtaggaggacccgaccaaccgaggagctcaattca 781418  T
Q  203 tcaccatcatagtcatccttatgaacatgcggagatgaatacactatggtttctcttgatgccaacaacaccatg 277  Q
    |||||||||||||| ||| |||||||| || |||||||||||| |||||||||||||||||||||||||| ||||    
T  781417 tcaccatcatagtcttccatatgaacaagcagagatgaatacattatggtttctcttgatgccaacaacaacatg 781343  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 11098604 - 11098685
Alignment:
Q  188 gaggagctcaattcatcaccatcatagtcatccttatgaacatgcggagatgaatacactatggtttctcttgatgccaaca 269  Q
    ||||||||||| ||||||||||||||||||| |||||||||| |||||||| ||| || ||||| ||| || ||||||||||    
T  11098604 gaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaaca 11098685  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 781735 - 781684
Alignment:
Q  1 ttgaggaaaatttcttgcccaatatattttgagaaaatatattcgcactttt 52  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  781735 ttgaggaaaatttcttgcccaatatattttgagaaaatatatttacactttt 781684  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 360446 - 360408
Alignment:
Q  6 gaaaatttcttgcccaatatattttgagaaaatatattc 44  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  360446 gaaaatttattgcctaatatattttgagaaaatatattc 360408  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 781672 - 781636
Alignment:
Q  7 aaaatttcttgcccaatatattttgagaaaatatatt 43  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  781672 aaaattttttgcccagtatattttgagaaaatatatt 781636  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 781784 - 781748
Alignment:
Q  7 aaaatttcttgcccaatatattttgagaaaatatatt 43  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  781784 aaaatttctcgcccgatatattttgagaaaatatatt 781748  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 781875 - 781847
Alignment:
Q  1 ttgaggaaaatttcttgcccaatatattt 29  Q
    |||||||||||||||||||||||||||||    
T  781875 ttgaggaaaatttcttgcccaatatattt 781847  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18308219 - 18308259
Alignment:
Q  1 ttgaggaaaatttcttgcccaatatattttgagaaaatata 41  Q
    |||| |||||||||||| |||||||||||||| ||||||||    
T  18308219 ttgaagaaaatttcttggccaatatattttgaaaaaatata 18308259  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 269
Target Start/End: Complemental strand, 17998725 - 17998644
Alignment:
Q  188 gaggagctcaattcatcaccatcatagtcatccttatgaacatgcggagatgaatacactatggtttctcttgatgccaaca 269  Q
    ||||||||||| ||||||||||||||||||| |||||||||| |||||||| ||| || ||||| ||| || ||||||||||    
T  17998725 gaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaaca 17998644  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 36283717 - 36283637
Alignment:
Q  188 gaggagctcaattcatcaccatcatagtcatccttatgaacatgcggagatgaatacactatggtttctcttgatgccaac 268  Q
    ||||||||||| ||||||||||||||||||| |||||||||| |||||||| ||| || ||||| ||| || |||||||||    
T  36283717 gaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaac 36283637  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 31710416 - 31710461
Alignment:
Q  190 ggagctcaattcatcaccatcatagtcatccttatgaacatgcgga 235  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||    
T  31710416 ggagctcaattcgtcaccatcatagtcatccttatgaacaggcgga 31710461  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 10755787 - 10755878
Alignment:
Q  188 gaggagctcaattcatcaccatcatagtcatccttatgaacatgcggagatgaatacactatggtttctcttgatgccaacaacaccatgga 279  Q
    ||||| |||||||||| | ||| ||||||||||| |||| || |||||||||||| || | |||||||||| ||||||||| ||||||||||    
T  10755787 gaggacctcaattcataaacattatagtcatcctcatgagcaggcggagatgaattcattgtggtttctctcgatgccaacgacaccatgga 10755878  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 10969556 - 10969647
Alignment:
Q  188 gaggagctcaattcatcaccatcatagtcatccttatgaacatgcggagatgaatacactatggtttctcttgatgccaacaacaccatgga 279  Q
    ||||| |||||||||| | ||| ||||||||||| |||| || |||||||||||| || | |||||||||| ||||||||| ||||||||||    
T  10969556 gaggacctcaattcataaacattatagtcatcctcatgagcaggcggagatgaattcattgtggtttctctcgatgccaacgacaccatgga 10969647  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 36542303 - 36542240
Alignment:
Q  1 ttgaggaaaatttcttgcccaatatattttgagaaaatatattcgcactttttaacttgaagaa 64  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||||||| | ||||||||    
T  36542303 ttgaagaaaatttcttgcccaatatattttgagaaaatatatttacactttttgatttgaagaa 36542240  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 36542517 - 36542454
Alignment:
Q  1 ttgaggaaaatttcttgcccaatatattttgagaaaatatattcgcactttttaacttgaagaa 64  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||||||| | ||||||||    
T  36542517 ttgaagaaaatttcttgcccaatatattttgagaaaatatatttacactttttgatttgaagaa 36542454  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1677482 - 1677545
Alignment:
Q  1 ttgaggaaaatttcttgcccaatatattttgagaaaatatattcgcactttttaacttgaagaa 64  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||| ||| | ||||||||    
T  1677482 ttgaagaaaatttcttgcccaatatattttgagaaaatatatttacactatttgatttgaagaa 1677545  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1684010 - 1684073
Alignment:
Q  1 ttgaggaaaatttcttgcccaatatattttgagaaaatatattcgcactttttaacttgaagaa 64  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||| ||| | ||||||||    
T  1684010 ttgaagaaaatttcttgcccaatatattttgagaaaatatatttacactatttgatttgaagaa 1684073  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 36542698 - 36542640
Alignment:
Q  6 gaaaatttcttgcccaatatattttgagaaaatatattcgcactttttaacttgaagaa 64  Q
    |||||| |||||||||||||||||||||||||||||||  |||||||| | ||||||||    
T  36542698 gaaaatatcttgcccaatatattttgagaaaatatatttacacttttttatttgaagaa 36542640  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 1677538 - 1677590
Alignment:
Q  1 ttgaggaaaatttcttgcccaatatattttgagaaaatatattcgcacttttt 53  Q
    |||| |||||||| |||||||||||||||||||||||||||||  ||||||||    
T  1677538 ttgaagaaaatttattgcccaatatattttgagaaaatatatttacacttttt 1677590  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 1684066 - 1684118
Alignment:
Q  1 ttgaggaaaatttcttgcccaatatattttgagaaaatatattcgcacttttt 53  Q
    |||| |||||||| |||||||||||||||||||||||||||||  ||||||||    
T  1684066 ttgaagaaaatttattgcccaatatattttgagaaaatatatttacacttttt 1684118  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 723300 - 723391
Alignment:
Q  188 gaggagctcaattcatcaccatcatagtcatccttatgaacatgcggagatgaatacactatggtttctcttgatgccaacaacaccatgga 279  Q
    ||||| |||||||||| | ||| |||||||| || |||| || |||||||||||| || ||||||| |||| ||||||||  ||||||||||    
T  723300 gaggacctcaattcataaacattatagtcattctcatgagcaggcggagatgaattcattatggttcctctcgatgccaatgacaccatgga 723391  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 12325892 - 12325932
Alignment:
Q  189 aggagctcaattcatcaccatcatagtcatccttatgaaca 229  Q
    |||||||||| || |||||||||||||| ||||||||||||    
T  12325892 aggagctcaaatcgtcaccatcatagtcctccttatgaaca 12325932  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 806788 - 806871
Alignment:
Q  196 caattcatcaccatcatagtcatccttatgaacatgcggagatgaatacactatggtttctcttgatgccaacaacaccatgga 279  Q
    |||||||| ||||| ||||||||||  || | || | |||||||||| || |||||||||||| ||||| ||||||||||||||    
T  806788 caattcataaccattatagtcatccacataagcaggaggagatgaattcattatggtttctctcgatgctaacaacaccatgga 806871  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 17594919 - 17594964
Alignment:
Q  190 ggagctcaattcatcaccatcatagtcatccttatgaacatgcgga 235  Q
    |||||||||||| |||||||||||||||||||| |||||| |||||    
T  17594919 ggagctcaattcgtcaccatcatagtcatccttgtgaacaggcgga 17594964  T

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Target: scaffold0130 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 17338 - 17293
Alignment:
Q  190 ggagctcaattcatcaccatcatagtcatccttatgaacatgcgga 235  Q
    |||| ||||||| ||||||||||||||||||||||||||| |||||    
T  17338 ggagttcaattcgtcaccatcatagtcatccttatgaacaggcgga 17293  T

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Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 60122 - 60162
Alignment:
Q  1 ttgaggaaaatttcttgcccaatatattttgagaaaatata 41  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  60122 ttgaggaaaatttattgccgaatatattttgagaaaatata 60162  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 11203641 - 11203693
Alignment:
Q  183 caaccgaggagctcaattcatcaccatcatagtcatccttatgaacatgcgga 235  Q
    |||| |||||||||||||| |||||||||||||| ||||||| |||| |||||    
T  11203641 caacagaggagctcaattcgtcaccatcatagtcttccttataaacaggcgga 11203693  T

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