View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1761_low_23 (Length: 255)
Name: NF1761_low_23
Description: NF1761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1761_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 3865914 - 3866126
Alignment:
| Q |
13 |
aatataataaacaaaataatggtaatacatgatcaaacctttttgtcttataatccttcaagactttcagaaaatcatcatacttatccctcctgttatc |
112 |
Q |
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| T |
3865914 |
aatataataaacaaaatagtggtaagacatgatcaaacctttttgtcttgtaatccttcaagactttcagaaaatcatcatacttatccctcctgttatc |
3866013 |
T |
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| Q |
113 |
ttgaagaaatctatgcttaacttcattaagaaattctttggcctttttgacttcacaatgtttccgagaatgtccttccattatctcgggttgccctagg |
212 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3866014 |
ttgaataaatctatgtttaacttcattaagaaattctttggcctttttgacttcacaatgtttccgagaatgtccttccattatctcgggttgccctagg |
3866113 |
T |
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| Q |
213 |
tttgaccttcaat |
225 |
Q |
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||||||||||||| |
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| T |
3866114 |
tttgaccttcaat |
3866126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 3865181 - 3865341
Alignment:
| Q |
13 |
aatataataaacaaaataatggtaatacatgatcaaacctttttgtcttataatccttcaagactttcagaaaatcatcatacttatccctcctgttatc |
112 |
Q |
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||||||||||| |||||| |||| | | |||||||||||||| |||| | |||||||||||||| |||||||| | ||||| ||| |||||| ||| | |
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| T |
3865181 |
aatataataaa-aaaatagtggtcacaaatgatcaaacctttgtgtcctgtaatccttcaagacattcagaaagttatcattcttttccctctgattaac |
3865279 |
T |
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| Q |
113 |
ttgaagaaatctatgcttaacttcattaagaaattctttggcctttttgacttcacaatgtt |
174 |
Q |
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| T |
3865280 |
ttgaataaatctacatttaacttcattcaaaaattctttggcattttttgcttcacaatgtt |
3865341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 3865580 - 3865711
Alignment:
| Q |
43 |
gatcaaacctttttgtcttataatccttcaagactttcagaaaatcatcatacttatccctcctgttatcttgaagaaatctatgcttaacttcattaag |
142 |
Q |
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|||||||||||| |||||| ||||| |||||||| |||| ||| | |||| ||||||||||| ||| |||||| ||||||| |||||| ||||| | |
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| T |
3865580 |
gatcaaacctttgtgtcttgtaatcattcaagacattcaaaaagttatcacacttatccctctgattaacttgaataaatctacacttaacatcattgac |
3865679 |
T |
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| Q |
143 |
aaattctttggcctttttgacttcacaatgtt |
174 |
Q |
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| T |
3865680 |
aaattctttggcatttttttcttcagaatgtt |
3865711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 32234198 - 32234283
Alignment:
| Q |
64 |
aatccttcaagactttcagaaaatcatcatacttatccctcctgttatcttgaagaaatctatgcttaacttcattaagaaattct |
149 |
Q |
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|||||||||| ||||||| ||| | |||||||||||| ||| | |||||||||| ||||||| ||| |||||||| | ||||||| |
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| T |
32234198 |
aatccttcaacactttcaaaaagtgatcatacttatctctcgtattatcttgaataaatctacactttacttcattgacaaattct |
32234283 |
T |
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