View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1761_low_25 (Length: 251)

Name: NF1761_low_25
Description: NF1761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1761_low_25
NF1761_low_25
[»] chr7 (4 HSPs)
chr7 (7-240)||(43314394-43314627)
chr7 (83-204)||(4299592-4299713)
chr7 (73-204)||(22114678-22114809)
chr7 (73-204)||(40509248-40509379)
[»] chr3 (3 HSPs)
chr3 (7-240)||(21530514-21530747)
chr3 (83-240)||(35166551-35166707)
chr3 (83-204)||(44602126-44602246)
[»] chr8 (1 HSPs)
chr8 (7-240)||(17594366-17594598)
[»] chr4 (4 HSPs)
chr4 (7-240)||(34742704-34742936)
chr4 (83-204)||(23103061-23103182)
chr4 (83-204)||(45535990-45536111)
chr4 (83-204)||(49343075-49343196)
[»] chr6 (1 HSPs)
chr6 (128-240)||(35004798-35004907)
[»] chr1 (2 HSPs)
chr1 (61-164)||(27557251-27557354)
chr1 (83-204)||(14471311-14471432)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 43314627 - 43314394
Alignment:
Q  7 caaacaacccaaccaccgccaccagcttaccgacgattccttggccgccattctcaccgatcgacgaaaataaaatcattttctttttccactcgacgag 106  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||    
T  43314627 caaacaacccaaccaccgccaccagcttaccggcgattccttggccgccattctcaccgattgacgaaaatgaaaccattttctttttccactcgacgag 43314528  T
Q  107 agctttccgttggtacaattagtttcacgaaaggagcaacttttacgttgaccctttttcttcctccgccgctgtaaggtcttttccggtcaccatacat 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43314527 agctttccgttggtccaattagtttcacgaaaggagcaacttttctgttgaccctttttcttcctccgccgcagtaaggtcttttccggtcaccatacat 43314428  T
Q  207 cgctttcctgcttcttcttttatgcttcattcat 240  Q
    | ||||||| ||||||||||||||||||||||||    
T  43314427 ctctttccttcttcttcttttatgcttcattcat 43314394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 4299713 - 4299592
Alignment:
Q  83 cattttctttttccactcgacgagagctttccgttggtacaattagtttcacgaaaggagcaacttttacgttgaccctttttcttcctccgccgctgta 182  Q
    |||||||||| ||| |||||| || ||||||| ||||| ||| || ||||||||||||| |||||||| ||   |||| ||||||||||||||||| | |    
T  4299713 cattttctttatcctctcgactagggctttccattggtccaactaatttcacgaaaggaacaactttttcgccaaccc-ttttcttcctccgccgccgga 4299615  T
Q  183 a-ggtcttttccggtcaccatac 204  Q
    | || ||||||||| ||||||||    
T  4299614 aggggcttttccggccaccatac 4299592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 22114809 - 22114678
Alignment:
Q  73 aaaataaaatcattttctttttccactcgacgagagctttccgttggtacaattagtttcacgaaaggagcaacttttacgttgaccctttttcttcctc 172  Q
    ||||||| | |||||||||| ||| |||||| || | ||||| ||||| ||| || ||||||||||||| ||||||||  |  || ||||||||||||||    
T  22114809 aaaataagaccattttctttatcctctcgactagggttttccattggtccaactaatttcacgaaaggaacaactttttagccga-cctttttcttcctc 22114711  T
Q  173 cgccgctgtaa-ggtcttttccggtcaccatac 204  Q
    |||| | | || || ||||||||| ||||||||    
T  22114710 cgccacgggaaggggcttttccggccaccatac 22114678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 40509379 - 40509248
Alignment:
Q  73 aaaataaaatcattttctttttccactcgacgagagctttccgttggtacaattagtttcacgaaaggagcaacttttacgttgaccctttttcttcctc 172  Q
    ||||||| | |||||||||| ||| |||||| || | ||||| ||||| ||| || ||||||||||||| ||||||||  |  || ||||||||||||||    
T  40509379 aaaataagaccattttctttatcctctcgactagggttttccattggtccaactaatttcacgaaaggaacaactttttagccga-cctttttcttcctc 40509281  T
Q  173 cgccgctgtaa-ggtcttttccggtcaccatac 204  Q
    |||| | | || || ||||||||| ||||||||    
T  40509280 cgccacgggaaggggcttttccggccaccatac 40509248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 21530514 - 21530747
Alignment:
Q  7 caaacaacccaaccaccgccaccagcttaccgacgattccttggccgccattctcaccgatcgacgaaaataaaatcattttctttttccactcgacgag 106  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||    
T  21530514 caaacaacccaaccaccgccaccagcttaccggcgattccttggccgccattctcaccgattgacgaaaatgaaaccattttctttttccactcgacgag 21530613  T
Q  107 agctttccgttggtacaattagtttcacgaaaggagcaacttttacgttgaccctttttcttcctccgccgctgtaaggtcttttccggtcaccatacat 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21530614 agctttccgttggtccaattagtttcacgaaaggagcaacttttctgttgaccctttttcttcctccgccgcagtaaggtcttttccggtcaccatacat 21530713  T
Q  207 cgctttcctgcttcttcttttatgcttcattcat 240  Q
    | ||||||| ||||||||||||||||||||||||    
T  21530714 ctctttccttcttcttcttttatgcttcattcat 21530747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 83 - 240
Target Start/End: Original strand, 35166551 - 35166707
Alignment:
Q  83 cattttctttttccactcgacgagagctttccgttggtacaattagtttcacgaaaggagcaacttttacgttgaccctttttcttcctccgccgctgta 182  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||| |||    
T  35166551 cattttctttttccactcgatgagagctttccgttggtccaattaatttcacgaaaggagcaacttttctgttgaccctttt-cttcctccgccgcagta 35166649  T
Q  183 aggtcttttccggtcaccatacatcgctttcctgcttcttcttttatgcttcattcat 240  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  35166650 aggtcttttccggtcaccatacatctctttccttcttcttcttttatgcttcattcat 35166707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 204
Target Start/End: Original strand, 44602126 - 44602246
Alignment:
Q  83 cattttctttttccactcgacgagagctttccgttggtacaattagtttcacgaaaggagcaacttttacgttgaccctttttcttcctccgccgctgta 182  Q
    |||||||||| ||| ||||||||| ||||||| ||||| |||||| |||||| |||||| |  |||||  || ||||||||| ||||||||||||| |||    
T  44602126 cattttctttatcctctcgacgagggctttccattggtccaattaatttcacaaaaggaacggctttttggtcgaccctttt-cttcctccgccgcggta 44602224  T
Q  183 aggtcttttccggtcaccatac 204  Q
    |||   ||||||| ||||||||    
T  44602225 aggggctttccggccaccatac 44602246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 17594598 - 17594366
Alignment:
Q  7 caaacaacccaaccaccgccaccagcttaccgacgattccttggccgccattctcaccgatcgacgaaaataaaatcattttctttttccactcgacgag 106  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  17594598 caaacaacccaaccaccgccaccagcttaccggcgattccttggccgccattctcaccgatcgacgaaaatgaaaccattttctttttccactcgacgag 17594499  T
Q  107 agctttccgttggtacaattagtttcacgaaaggagcaacttttacgttgaccctttttcttcctccgccgctgtaaggtcttttccggtcaccatacat 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||  |||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  17594498 agctttccgttggtccaattagtttcacgaaaggagcaacttttctgttgaccc-ttttcttcctccgccgcagtaaggtcttttccggtcaccatacat 17594400  T
Q  207 cgctttcctgcttcttcttttatgcttcattcat 240  Q
    | ||||||| ||||||||||||||||||||||||    
T  17594399 ctctttccttcttcttcttttatgcttcattcat 17594366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 34742704 - 34742936
Alignment:
Q  7 caaacaacccaaccaccgccaccagcttaccgacgattccttggccgccattctcaccgatcgacgaaaataaaatcattttctttttccactcgacgag 106  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  34742704 caaacaacccaaccaccgccaccagcttaccggcgattccttggccgccattctcaccgatcgacgaaaatgaaaccattttctttttccactcgacgag 34742803  T
Q  107 agctttccgttggtacaattagtttcacgaaaggagcaacttttacgttgaccctttttcttcctccgccgctgtaaggtcttttccggtcaccatacat 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||  |||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  34742804 agctttccgttggtccaattagtttcacgaaaggagcaacttttctgttgaccc-ttttcttcctccgccgcagtaaggtcttttccggtcaccatacat 34742902  T
Q  207 cgctttcctgcttcttcttttatgcttcattcat 240  Q
    | ||||||| ||||||||||||||||||||||||    
T  34742903 ctctttccttcttcttcttttatgcttcattcat 34742936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 204
Target Start/End: Original strand, 23103061 - 23103182
Alignment:
Q  83 cattttctttttccactcgacgagagctttccgttggtacaattagtttcacgaaaggagcaacttttacgttgaccctttttcttcctccgccgctgta 182  Q
    |||||||||| ||| ||||||||| ||||||| ||||| |||||| ||||||||||||| || |||||  || ||||| ||||||||||||||||| |||    
T  23103061 cattttctttatcctctcgacgagggctttccattggtccaattaatttcacgaaaggaacagctttttggtcgaccc-ttttcttcctccgccgcggta 23103159  T
Q  183 a-ggtcttttccggtcaccatac 204  Q
    | || ||||||||| ||||||||    
T  23103160 aggggcttttccggccaccatac 23103182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 45536111 - 45535990
Alignment:
Q  83 cattttctttttccactcgacgagagctttccgttggtacaattagtttcacgaaaggagcaacttttacgttgaccctttttcttcctccgccgctgta 182  Q
    |||||||||| ||| ||||||||| ||||||| ||||| |||||| ||| ||||||||| ||||||||  || ||||||||| ||||||||||||| |||    
T  45536111 cattttctttatcctctcgacgagggctttccattggtccaattaattttacgaaaggaacaactttttggtcgaccctttt-cttcctccgccgcggta 45536013  T
Q  183 a-ggtcttttccggtcaccatac 204  Q
    | || ||||||||| ||||||||    
T  45536012 aggggcttttccggccaccatac 45535990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 204
Target Start/End: Original strand, 49343075 - 49343196
Alignment:
Q  83 cattttctttttccactcgacgagagctttccgttggtacaattagtttcacgaaaggagcaacttttacgttgaccctttttcttcctccgccgctgta 182  Q
    |||||||||| ||| ||||||  | ||||||| ||||| ||| || ||||||||||||| |||||||| ||  ||||| ||||||||||||||||| | |    
T  49343075 cattttctttatcctctcgacttgggctttccattggtccaactaatttcacgaaaggaacaactttttcgccgaccc-ttttcttcctccgccgccgga 49343173  T
Q  183 a-ggtcttttccggtcaccatac 204  Q
    | || ||||||||| ||||||||    
T  49343174 aggggcttttccggccaccatac 49343196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 35004798 - 35004907
Alignment:
Q  128 gtttcacgaaaggagcaacttttacgttgaccctttttcttcctccgccgctgtaaggtcttttccggtcaccatacatcgctttcctgcttcttctttt 227  Q
    ||||||||||||||| ||||||| ||||||||||||||||||| |  |||| ||||||||||||||| | || |||||||| | ||   |||||||| ||    
T  35004798 gtttcacgaaaggagtaactttttcgttgaccctttttcttcccctaccgcggtaaggtcttttccgattacgatacatcgttgtc---cttcttctctt 35004894  T
Q  228 atgcttcattcat 240  Q
    |||||||||||||    
T  35004895 atgcttcattcat 35004907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 27557354 - 27557251
Alignment:
Q  61 caccgatcgacgaaaataaaatcattttctttttccactcgacgagagctttccgttggtacaattagtttcacgaaaggagcaacttttacgttgaccc 160  Q
    ||||||||||  ||| ||| | |||||||||| ||| ||||||||| ||||||| ||||| |||||| ||||||||||||| || |||||  || |||||    
T  27557354 caccgatcgaaaaaagtaagaccattttctttatcctctcgacgagggctttccattggtccaattaatttcacgaaaggaacagctttttggtcgaccc 27557255  T
Q  161 tttt 164  Q
    ||||    
T  27557254 tttt 27557251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 204
Target Start/End: Original strand, 14471311 - 14471432
Alignment:
Q  83 cattttctttttccactcgacgagagctttccgttggtacaattagtttcacgaaaggagcaacttttacgttgaccctttttcttcctccgccgctgta 182  Q
    |||||||||| ||| |||| | || ||||||| ||||| ||| || ||||||||||||| |||||||| ||  ||||| ||||||||||||||||| | |    
T  14471311 cattttctttatcctctcgtctagggctttccattggtccaactaatttcacgaaaggaacaactttttcgccgaccc-ttttcttcctccgccgcggga 14471409  T
Q  183 a-ggtcttttccggtcaccatac 204  Q
    | || ||||||||| ||||||||    
T  14471410 aggggcttttccggccaccatac 14471432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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