View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1761_low_26 (Length: 240)
Name: NF1761_low_26
Description: NF1761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1761_low_26 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 6517617 - 6517392
Alignment:
| Q |
17 |
attaacaaatgtgaagatcttcatttggtaatttgttgttatcggaaacttaggtcacatacatatgtcattagagtcacaacctcgaagtcgcaaattg |
116 |
Q |
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| T |
6517617 |
attaacaaatgtgaagatcttcatttggtaatttgttgttatcggaaacttaggtcacatacatatgtcattagagtcacaacctcgaagtcgcaaattg |
6517518 |
T |
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| Q |
117 |
actaac-ttgttttgta-atgcaatgtatgttttgaataatggtgaatttgacataatggnnnnnnnaaaggaaaattcgacataattgtactgaaccat |
214 |
Q |
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| T |
6517517 |
actaactttgttttgtagatggaatgtatgttttgattaatggtgaattcgacataatcgctttttttaaggaaaattcgacataattgtactgaaccat |
6517418 |
T |
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| Q |
215 |
tataattttgacaaaatttacatttt |
240 |
Q |
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| T |
6517417 |
tataattttgacaaaatttacatttt |
6517392 |
T |
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