View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1761_low_27 (Length: 240)
Name: NF1761_low_27
Description: NF1761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1761_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2310274 - 2310052
Alignment:
| Q |
1 |
agtgtaatatcaagagtcacaatgaatccgcaatcgcggccgcaatttaaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaaatc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2310274 |
agtgtaatatcaagagttacaatgaatccgcaatcgcggccgcaatttaaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaaatc |
2310175 |
T |
|
| Q |
101 |
ataaaatacctcatgtgcaattaaggttgctttctctgcatcacttggaaaaggcttaaccaaatcccagcttagacctatcttctcattagcaaaacat |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2310174 |
ataaaatacctcacgtgcaattaaggttgctttctctgcatcacttggaaaaggcttaaccaaatcccagcttagacctatcttcccattagcaaaacat |
2310075 |
T |
|
| Q |
201 |
gtgccagatatataaggtaaaaa |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2310074 |
gtgccagatatataaggtaaaaa |
2310052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 2928767 - 2928963
Alignment:
| Q |
5 |
taatatcaagagtcacaatgaatccgcaatcgcggccgcaatttaaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaaa-tcata |
103 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2928767 |
taatgtcaagagtcacaatgaattcgcaatcgcggccacaatttaaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaaagtcata |
2928866 |
T |
|
| Q |
104 |
aaatacctcatgtgcaattaaggttgctttctctgcatcacttggaaaaggcttaaccaaatcccagcttagacctatcttctcattagcaaaacat |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||| |||||||| |||| | ||||||| |
|
|
| T |
2928867 |
aaatacctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttcccattgggaaaacat |
2928963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University