View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1761_low_28 (Length: 236)
Name: NF1761_low_28
Description: NF1761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1761_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 1016104 - 1015885
Alignment:
| Q |
7 |
tcgtccacgtcgactcaccacaaagtgcagaccacttaacgaacatatgcgtgaaaatggatcagacaaagagaaaacctgtgaaggggcagagttcaac |
106 |
Q |
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| T |
1016104 |
tcgtccacgtcgactcaccacaaagtgcagaccactgaacgaacatatgcgtgaaaatggatcagacaaagagaaaacctgtgaaggggcagagttcaac |
1016005 |
T |
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| Q |
107 |
caaacataaacagttgaacacgcagctagcagctgctaaaagcaacagtctcagccgaatcagcccagccacgaacacatttctcaaagacctgctccta |
206 |
Q |
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| T |
1016004 |
caaacagaaacagctgcacacgcagctagcagctgctaacagcaacagtctcagccgaaccagcccagccacagacatatttctcaaagacctgctccta |
1015905 |
T |
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| Q |
207 |
cccttttcaactatgatgat |
226 |
Q |
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||||||||| ||||||||| |
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| T |
1015904 |
cccttttcagttatgatgat |
1015885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 45113810 - 45113687
Alignment:
| Q |
103 |
caaccaaacataaacagttgaacacgcagctagcagctgctaaaagcaacagtctcagccgaatcagcccagccacgaacacatttctcaaagacctgct |
202 |
Q |
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| T |
45113810 |
caaccaaacagaaacagctgcacacgcagctagcagctactaacagcagcagtctcagccgaactagcccaaccactgacatctttctcaaagacttgct |
45113711 |
T |
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| Q |
203 |
cctacccttttcaactatgatgat |
226 |
Q |
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| T |
45113710 |
cctacccttttcaactatgatgat |
45113687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 226
Target Start/End: Complemental strand, 11288349 - 11288320
Alignment:
| Q |
197 |
cctgctcctacccttttcaactatgatgat |
226 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11288349 |
cctgctcctacccttttcaactatgatgat |
11288320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 38116312 - 38116272
Alignment:
| Q |
186 |
tttctcaaagacctgctcctacccttttcaactatgatgat |
226 |
Q |
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| T |
38116312 |
tttctcaaagacctgctcctacccttttcaactatgatgat |
38116272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 22776194 - 22776157
Alignment:
| Q |
136 |
cagctgctaaaagcaacagtctcagccgaatcagccca |
173 |
Q |
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| T |
22776194 |
cagctgctaacagcaacagtctcagccgaaccagccca |
22776157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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