View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1761_low_3 (Length: 439)

Name: NF1761_low_3
Description: NF1761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1761_low_3
NF1761_low_3
[»] chr6 (4 HSPs)
chr6 (24-377)||(1825637-1825988)
chr6 (29-134)||(33293535-33293643)
chr6 (291-337)||(1834114-1834160)
chr6 (73-128)||(12636199-12636255)
[»] chr4 (3 HSPs)
chr4 (20-132)||(24899322-24899435)
chr4 (34-135)||(41496052-41496153)
chr4 (36-111)||(56329208-56329283)
[»] chr3 (1 HSPs)
chr3 (34-135)||(5411413-5411514)
[»] chr7 (1 HSPs)
chr7 (20-147)||(42022799-42022927)
[»] scaffold0178 (1 HSPs)
scaffold0178 (82-147)||(6147-6212)
[»] chr1 (1 HSPs)
chr1 (74-115)||(31231148-31231189)


Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 24 - 377
Target Start/End: Complemental strand, 1825988 - 1825637
Alignment:
Q  24 aaactaattattcattcattcatttcacaatgattacaatgtcaaaaccattatttatagcattggcatttcaatgactcatcacaaaggatctctctag 123  Q
    ||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1825988 aaactaattcttcactcattcatttcacaatgattacaatgacaaaaccattatttatagcattgacatttcaatgactcatcacaaaggatctctctag 1825889  T
Q  124 atccttttagaaagcatgactcattcacctaaaaatataacttcaacctattctatattcaattgggcctaactttggtcgttacaatctccttgagttt 223  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  1825888 atcattctagaaagcatgactcattcacctaaaaatataacttcaacctattc--tattcaattgggcctaacttaggtcgttacaatctccttgagttt 1825791  T
Q  224 tgagcaatcataccaatgaatcagacacaannnnnnnattcaaaagcttagaagagtttatttgagtttatctactattaacataaacatataagcatat 323  Q
    ||| |||||||||||||||||| |||||||       ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1825790 tgaacaatcataccaatgaatc-gacacaatttttttattcaaaagcttaaaagagtttatttgagtttatctactattgacataaacatataagcatat 1825692  T
Q  324 gccatagt-aaaaaagtatttcaaatgttcttaattataaaatcatttacaattt 377  Q
    |||||| | ||||||||||||||| ||||||||||||||||||||||||||||||    
T  1825691 gccataataaaaaaagtatttcaagtgttcttaattataaaatcatttacaattt 1825637  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 33293643 - 33293535
Alignment:
Q  29 aattattcattcattcatttc-acaatgattacaatgtcaaaaccattatttatagcattggcatttcaatgactcatcac--aaaggatctctctagat 125  Q
    |||| |||||||||||||||| | |||||||||||||   || ||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  33293643 aattcttcattcattcatttcgataatgattacaatgatcaacccattatttatagcattggcattccaatgactcatcacaaaaaggatctctctagat 33293544  T
Q  126 ccttttaga 134  Q
    |||| ||||    
T  33293543 ccttctaga 33293535  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 337
Target Start/End: Complemental strand, 1834160 - 1834114
Alignment:
Q  291 ttatctactattaacataaacatataagcatatgccatagtaaaaaa 337  Q
    |||||||||||| |||||||||||||||||||||||| | |||||||    
T  1834160 ttatctactattgacataaacatataagcatatgccacaataaaaaa 1834114  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 12636255 - 12636199
Alignment:
Q  73 attatttatagcattggcatttc-aatgactcatcacaaaggatctctctagatcct 128  Q
    |||||||| | ||||| |||||| |||||||||||||||| |||||||||| |||||    
T  12636255 attatttacatcattgacatttccaatgactcatcacaaaagatctctctaaatcct 12636199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 24899435 - 24899322
Alignment:
Q  20 taacaaactaattattcattcattcatttc-acaatgattacaatgtcaaaaccattatttatagcattggcatttcaatgactcatcacaaaggatctc 118  Q
    |||||||||| || |||||||||| ||||  |  |||||||||||| | || ||||||||||||| |||| |||||||||||||| ||||||| ||||||    
T  24899435 taacaaactatttcttcattcatttattttgattatgattacaatgaccaatccattatttatagtattgacatttcaatgactcgtcacaaatgatctc 24899336  T
Q  119 tctagatcctttta 132  Q
    ||||||||||||||    
T  24899335 tctagatcctttta 24899322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 41496153 - 41496052
Alignment:
Q  34 ttcattcattcatttcacaatgattacaatgtcaaaaccattatttatagcattggcatttcaatgactcatcacaaaggatctctctagatccttttag 133  Q
    ||||||||||||||| | || |||||||||| | || ||| |||||||||||||| ||||  |||||||||||||||| ||| |||||| || ||| |||    
T  41496153 ttcattcattcatttgataaggattacaatgaccaacccactatttatagcattgacattctaatgactcatcacaaatgatatctctatattcttctag 41496054  T
Q  134 aa 135  Q
    ||    
T  41496053 aa 41496052  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 56329283 - 56329208
Alignment:
Q  36 cattcattcatttcacaatgattacaatgtcaaaaccattatttatagcattggcatttcaatgactcatcacaaa 111  Q
    ||||||||||||| | |||||||| |||| | || | |||||||||||||||| |||| |||||||||||| ||||    
T  56329283 cattcattcatttgataatgattataatgaccaaccaattatttatagcattgacattccaatgactcatcgcaaa 56329208  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 5411514 - 5411413
Alignment:
Q  34 ttcattcattcatttcacaatgattacaatgtcaaaaccattatttatagcattggcatttcaatgactcatcacaaaggatctctctagatccttttag 133  Q
    ||||||||||||||| | |||| ||||||||   |   ||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||| |||    
T  5411514 ttcattcattcatttgataatgtttacaatgagcactacattatttatatcattggcattacaatgactcatcataaaggatctctctagatccttctag 5411415  T
Q  134 aa 135  Q
    ||    
T  5411414 aa 5411413  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 42022927 - 42022799
Alignment:
Q  20 taacaaactaattattcattcattcatttcacaatgattacaatgtcaaaacca-ttatttatagcattggcatttcaatgactcatcacaaaggatctc 118  Q
    ||||||||||||| ||||||||||||||||| ||| |||||| |     || || ||||||||||  |||  |||  ||||||||||||||| ||| |||    
T  42022927 taacaaactaattcttcattcattcatttcataatcattacatttgatcaatcacttatttatagttttgatattctaatgactcatcacaatggaactc 42022828  T
Q  119 tctagatccttttagaaagcatgactcat 147  Q
    ||||||||||| |||| ||||||||||||    
T  42022827 tctagatccttctagagagcatgactcat 42022799  T

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Target: scaffold0178 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 6212 - 6147
Alignment:
Q  82 agcattggcatttcaatgactcatcacaaaggatctctctagatccttttagaaagcatgactcat 147  Q
    |||||||  |||||||||||||||||  |||||||| | |||||| ||||||| || |||||||||    
T  6212 agcattgatatttcaatgactcatcatcaaggatctttttagatcattttagagagtatgactcat 6147  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 31231148 - 31231189
Alignment:
Q  74 ttatttatagcattggcatttcaatgactcatcacaaaggat 115  Q
    |||||||||||||||||||| ||||||||  |||||||||||    
T  31231148 ttatttatagcattggcattccaatgacttgtcacaaaggat 31231189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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