View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1761_low_30 (Length: 201)
Name: NF1761_low_30
Description: NF1761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1761_low_30 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 49690739 - 49690539
Alignment:
| Q |
1 |
tgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaagaaacccaagacttccacaatcaaatgattctggacaatcatcac |
100 |
Q |
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| T |
49690739 |
tgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaaaaaacccaagatttccacaaccaaatgagtctggacaatcaccac |
49690640 |
T |
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| Q |
101 |
tgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaaggaacctaaaatgtaaaacataaactaaagccattca |
200 |
Q |
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| T |
49690639 |
tgtgtccatttcctttcctagttaagacaagtagcagtaacacagtcaaatgagagaacaaaaggaacctaaaatgtaaaacataaactaaagccattca |
49690540 |
T |
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| Q |
201 |
a |
201 |
Q |
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| T |
49690539 |
a |
49690539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 49679104 - 49678949
Alignment:
| Q |
1 |
tgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaagaaacccaagacttccacaatcaaatgattctggacaatcatcac |
100 |
Q |
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| T |
49679104 |
tgaattgccaatgtaccacagcttgggaattcaactgttgtaaaagggtatttaatcaa--------ttccacaatcaaatgattctggacaatcatcac |
49679013 |
T |
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| Q |
101 |
tgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaag |
164 |
Q |
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| T |
49679012 |
tgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaag |
49678949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 49686479 - 49686316
Alignment:
| Q |
1 |
tgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaagaaacccaagacttccacaatcaaatgattctggacaatcatcac |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||| || || |||||| ||||||||||||||||||||||||||||||||| |
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| T |
49686479 |
tgaattgccaatgcaccacagtttgggaattcaactgtggtaaaagggtagccaaccaatccaagatttccacaatcaaatgattctggacaatcatcac |
49686380 |
T |
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| Q |
101 |
tgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaag |
164 |
Q |
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| T |
49686379 |
tgtgtccatttcctttactagttaagacaagtagcagtaacacagtcaaatgagagaacaaaag |
49686316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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