View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1761_low_4 (Length: 396)

Name: NF1761_low_4
Description: NF1761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1761_low_4
NF1761_low_4
[»] chr1 (8 HSPs)
chr1 (16-384)||(27358848-27359217)
chr1 (321-384)||(32157257-32157320)
chr1 (96-168)||(13791178-13791250)
chr1 (325-384)||(32167864-32167923)
chr1 (42-181)||(13017747-13017889)
chr1 (326-384)||(27348743-27348801)
chr1 (326-384)||(32164996-32165054)
chr1 (85-138)||(8904776-8904829)
[»] chr5 (2 HSPs)
chr5 (16-152)||(5069082-5069221)
chr5 (38-138)||(36855239-36855342)
[»] chr3 (1 HSPs)
chr3 (87-183)||(10793660-10793756)
[»] chr2 (2 HSPs)
chr2 (86-169)||(19546538-19546621)
chr2 (40-95)||(44915611-44915667)
[»] chr4 (1 HSPs)
chr4 (97-167)||(394513-394583)
[»] chr7 (1 HSPs)
chr7 (86-183)||(31446964-31447061)
[»] chr8 (1 HSPs)
chr8 (38-128)||(20684109-20684201)


Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 384
Target Start/End: Original strand, 27358848 - 27359217
Alignment:
Q  16 gtatctacggtcaaaatccggaactaaatgtcattttttgtaggtaaaatctaaaagacaataattttgcgtcaattatgaattattcatagataaatgt 115  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27358848 gtatctacagtcaaaattcggaactaaatgtcattttttgtaggtaaaatctaaaagacaacaattttgcgtcaattatgaattattcatagataaatgt 27358947  T
Q  116 atatttgtctgtatgtaaaagtcacgtttaaatcattacttgtaaatttaactaaagcttagttgtttatgtgacgttgatgttagannnnnnngttcaa 215  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||       ||||||    
T  27358948 atatttgtctctatgtaaaagtcacgtttaaatcattactcgtaaatttaactaaaacttagttgtttttgtgacgttgatgttagatttttttgttcaa 27359047  T
Q  216 gtctttttaaataaaaaatagtcataggacctccgaattatcgggg-cgaccctcgatcttgatagaaagtaactgaaccatacgtctaaatcacttgtt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27359048 gtctttttaaataaaaaatagtcataggacctccgaattatcggggacgaccctcgatcttgatagaaagtaactgaaccatacgtctaaatcacttgtt 27359147  T
Q  315 taaatcataacacaggttgatctttgtggccatgccacaatagcagcttcacatgcactcttttcatctg 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27359148 taaatcataacacaggttgatctttgtggccatgccacaatagcagcttcacatgcactcttttcatctg 27359217  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 32157320 - 32157257
Alignment:
Q  321 ataacacaggttgatctttgtggccatgccacaatagcagcttcacatgcactcttttcatctg 384  Q
    |||| ||||||| || |||||| |||||||||| |||||||||| |||||||||||| ||||||    
T  32157320 ataatacaggttaatatttgtgcccatgccacattagcagcttctcatgcactctttgcatctg 32157257  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 13791178 - 13791250
Alignment:
Q  96 aattattcatagataaatgtatatttgtctgtatgtaaaagtcacgtttaaatcattacttgtaaatttaact 168  Q
    |||||| ||| | ||||||| ||||| |||||  ||||||||||  |||||||||||||||||| ||||||||    
T  13791178 aattatacattgttaaatgtttatttttctgtgggtaaaagtcatatttaaatcattacttgtatatttaact 13791250  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 384
Target Start/End: Complemental strand, 32167923 - 32167864
Alignment:
Q  325 cacaggttgatctttgtggccatgccacaatagcagcttcacatgcactcttttcatctg 384  Q
    |||||||  |||||||||||||||||||| |||||||| ||||| ||||  |||||||||    
T  32167923 cacaggtcaatctttgtggccatgccacactagcagctgcacatacactactttcatctg 32167864  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 181
Target Start/End: Complemental strand, 13017889 - 13017747
Alignment:
Q  42 aatgtcattt-tttgtaggtaaaa-tctaaaagacaataattttgc-gtcaattatgaattattcatagataaatgtatatttgtctgtatgtaaaagtc 138  Q
    |||||||||| ||||||||||||| |||||| ||||| |||||||  |||||||| | | | | ||||||||||||| |||||| |||||  |||||||     
T  13017889 aatgtcatttatttgtaggtaaaagtctaaatgacaacaattttgatgtcaattaggcactgtccatagataaatgtctatttgactgtagataaaagta 13017790  T
Q  139 acgtttaaatcattacttgtaaatttaactaaagcttagttgt 181  Q
      |||| |||| || ||| || ||||||||| | |||||||||    
T  13017789 gtgtttgaatcgttgcttatatatttaactacaacttagttgt 13017747  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 27348801 - 27348743
Alignment:
Q  326 acaggttgatctttgtggccatgccacaatagcagcttcacatgcactcttttcatctg 384  Q
    ||||||| |||||||||||||||||||| | |||||||||||   ||| ||||||||||    
T  27348801 acaggttaatctttgtggccatgccacattggcagcttcacacatacttttttcatctg 27348743  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 32165054 - 32164996
Alignment:
Q  326 acaggttgatctttgtggccatgccacaatagcagcttcacatgcactcttttcatctg 384  Q
    ||||||| |||||||||||||||| ||| |||||||| ||||  |||| ||||||||||    
T  32165054 acaggttaatctttgtggccatgctacattagcagctgcacacacactgttttcatctg 32164996  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 8904776 - 8904829
Alignment:
Q  85 cgtcaattatgaattattcatagataaatgtatatttgtctgtatgtaaaagtc 138  Q
    ||||||||||| ||||| ||||| ||||||| |||||||||||  |||||||||    
T  8904776 cgtcaattatgcattatccataggtaaatgtctatttgtctgtgggtaaaagtc 8904829  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 5069082 - 5069221
Alignment:
Q  16 gtatctacggtcaaaatccggaactaaatgtcatttttt-gtaggtaaaa-tctaaaagacaataattttgc-gtcaattatgaattattcatagataaa 112  Q
    ||||||||||||||||| ||  | ||||| ||| ||||| ||| |||||| | | |||||| | |||||||  |||||||||| ||| ||||| ||||||    
T  5069082 gtatctacggtcaaaattcgtcattaaatatcaatttttcgtaagtaaaagtttgaaagactacaattttgttgtcaattatgcattgttcatggataaa 5069181  T
Q  113 tgtatatttgtctgtatgtaaaagtcacgtttaaatcatt 152  Q
    ||| ||||||| ||||||||||||||| |||| |||||||    
T  5069182 tgtttatttgtttgtatgtaaaagtcatgtttgaatcatt 5069221  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 36855239 - 36855342
Alignment:
Q  38 actaaatgtcatttttt-gtaggtaaaa-tctaaaagacaataattttgc-gtcaattatgaattattcatagataaatgtatatttgtctgtatgtaaa 134  Q
    |||||||||| |||||  |||||||||| ||| |||||||  |||||||| |||||||||| ||||||||||| ||||||| ||||| |||||  |||||    
T  36855239 actaaatgtcctttttccgtaggtaaaagtctgaaagacagcaattttgctgtcaattatgcattattcataggtaaatgtttatttatctgtgggtaaa 36855338  T
Q  135 agtc 138  Q
    ||||    
T  36855339 agtc 36855342  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 10793756 - 10793660
Alignment:
Q  87 tcaattatgaattattcatagataaatgtatatttgtctgtatgtaaaagtcacgtttaaatcattacttgtaaatttaactaaagcttagttgttt 183  Q
    ||||||||| | ||||||||| ||||||| ||||| ||| || |||||||||| |||| ||||||| ||  || ||||||||||| |||| ||||||    
T  10793756 tcaattatgcactattcataggtaaatgtctatttatctataggtaaaagtcatgtttgaatcattgctcatatatttaactaaaacttaattgttt 10793660  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 19546621 - 19546538
Alignment:
Q  86 gtcaattatgaattattcatagataaatgtatatttgtctgtatgtaaaagtcacgtttaaatcattacttgtaaatttaacta 169  Q
    |||||||||  ||| | ||||| |||||||||||||||||||  |||||||||| ||||||| |||| || ||| |||||||||    
T  19546621 gtcaattatacattgtccataggtaaatgtatatttgtctgttggtaaaagtcatgtttaaaccattgctcgtatatttaacta 19546538  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 44915611 - 44915667
Alignment:
Q  40 taaatgtcattttttgtaggtaaaa-tctaaaagacaataattttgcgtcaattatg 95  Q
    ||||||||||||||||||||||||| |||||||| ||| |||||   ||||||||||    
T  44915611 taaatgtcattttttgtaggtaaaagtctaaaaggcaacaatttattgtcaattatg 44915667  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 394513 - 394583
Alignment:
Q  97 attattcatagataaatgtatatttgtctgtatgtaaaagtcacgtttaaatcattacttgtaaatttaac 167  Q
    ||||| ||||||||||| | ||||  |||||| |||||||||| ||||||||||||| | ||| |||||||    
T  394513 attatccatagataaatatctattcatctgtaagtaaaagtcatgtttaaatcattattagtatatttaac 394583  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 31447061 - 31446964
Alignment:
Q  86 gtcaattatgaattattcatagataaatgtatatttgtctgtatgtaaaagtcacgtttaaatcattacttgtaaatttaactaaagcttagttgttt 183  Q
    |||||||||| ||| | |||  |||||||| ||||||| |||| ||||||||||  ||| |||||||| |  || ||||||||| | |||||||||||    
T  31447061 gtcaattatgcattgtccatgaataaatgtctatttgtgtgtaagtaaaagtcatatttgaatcattattcatatatttaactacaacttagttgttt 31446964  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 20684109 - 20684201
Alignment:
Q  38 actaaatgtcattttttgtaggtaaaa-tctaaaagacaataattttgc-gtcaattatgaattattcatagataaatgtatatttgtctgta 128  Q
    ||||||||| ||||||||||||||||| ||   ||||||| |||||| | | |||||||| ||| ||||||| ||||||| ||||| ||||||    
T  20684109 actaaatgttattttttgtaggtaaaagtccggaagacaacaattttactgccaattatgcattgttcataggtaaatgtctatttatctgta 20684201  T

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