View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17620_high_3 (Length: 403)
Name: NF17620_high_3
Description: NF17620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17620_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 30142770 - 30143156
Alignment:
| Q |
1 |
aatatgggtttctcttaggtgtcctccatgcaagataatttgcataccttagttcaaaataattctcattatattcataatcaataatgaattggtaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
30142770 |
aatatgggtttctcttaggtgtcctccatgcaagataatttgcataccttagttcaaagttattctcattatattcataatcaataatgaattggtaatc |
30142869 |
T |
|
| Q |
101 |
acgagtgtgtctcttgttaaaagggtaacaatatcataagccttcattaggttaatccaccttttggcacctccataaagtaaatatctacgacttttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30142870 |
acgagtgtgtctcttgttaaaagggtaacaatatcataagccttcattaggttaatccaccttttggcacctccataaagtaaatatctacgacttttca |
30142969 |
T |
|
| Q |
201 |
tttttactaatggaagcacctctattggaggcttaatcactaatgaaatgatcaaatactttaatgctaaaattagctttaattacaccctaactaatga |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30142970 |
tttttactaatggaagcacatctattggaggcttaatcactaatgaaatgatcaaatactataatgctaaaattagctttaattacaccctaactaatga |
30143069 |
T |
|
| Q |
301 |
attaacaaatcttgtttatgtcattcatcttacgatagatcttttcctttcaaatatcatctctaaggtggactcttttgtgatagt |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30143070 |
attaacaaatcttgtttatgtcattcatcttacgatagatcttttcctttcaaatatcatctctaaggtggactcttttgtgatagt |
30143156 |
T |
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