View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17620_high_5 (Length: 282)

Name: NF17620_high_5
Description: NF17620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17620_high_5
NF17620_high_5
[»] chr3 (1 HSPs)
chr3 (1-282)||(22938758-22939039)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 22939039 - 22938758
Alignment:
Q  1 tttggtatggtttggattttcggtttcatttgctcaaaaaatcggttataaaactacttatgttaattatctaccttagagctatgcatggtcactacaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| ||||    
T  22939039 tttgatatggtttggattttcggtttcatttgctcaaaaaatcggttataaaactacttatgttatttatctaccttagagctattcattgtcacaacaa 22938940  T
Q  101 atgtacaacaccgcacttcaatacgccttctcttgctagaaatacctattataagtgacaaaatagatggtttggatggacatgaatttatatgaaaatt 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22938939 atgtacaacaccgcacttcaatacgccttttcttgctagaaatacctgttataagtgacaaaatagatggtttggatggacatggatttatatgaaaatt 22938840  T
Q  201 aatcgatctgacatggatttatcaataaacgagttgaatggatatatatttggtgggttaaattgccactctattacccaaa 282  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  22938839 aatcgatctaacatggatttatcaataaacgagttgaatggatatatatttgatgggttaaattgccagtctattacccaaa 22938758  T

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