View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17620_low_2 (Length: 657)
Name: NF17620_low_2
Description: NF17620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17620_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 286 - 647
Target Start/End: Original strand, 2545670 - 2546023
Alignment:
| Q |
286 |
tccaaggagaacgatttaaagattctgcatcatttctacttctgatgtgcttcaagttaaaagcataataaagtgtattatgctgctgcctaatgtctgg |
385 |
Q |
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| T |
2545670 |
tccaaggagaacgatttaaagattctgcatcatttctacttctgatgtgcttcaagttaa--------taaagtgtattatgttgctgcctaatgtctgg |
2545761 |
T |
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| Q |
386 |
ctgaatcctcatttgatgaagaaatcataacaaaacaatgtaggcaaaaattctttcagcggaattagttttacaaaatcttgtcgcagaaattgtttgg |
485 |
Q |
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| T |
2545762 |
ctgaatcctcatttgatgaagaaatcataacaaaacaatgtaggcaaaaattctttcagcggaattagttttacaaaatcttgtcgcaaaaattgtttgg |
2545861 |
T |
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| Q |
486 |
ttattttcttccttattatcctgctggacaaaaacaatgtgaacaaaaagttcttttaggactgatagactttccttattacactcttatactaaagaaa |
585 |
Q |
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| T |
2545862 |
ttattttcttccttattatcctgctggacaaaaacaatgtgaacaaaatgttcttttaggactgatagactttccttattacactcttatactaaagaaa |
2545961 |
T |
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| Q |
586 |
aacaaacttggcttcattaaaaataatccgtatcaatacatggaaactcttggcgacctttg |
647 |
Q |
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| T |
2545962 |
aacaaacttggcttcattaaaaataatccgtattaatacatggaaactcttggcaacctttg |
2546023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 2362200 - 2362102
Alignment:
| Q |
34 |
acttgactacctctacttgttcaacaagaaaatacatgatttctaccttcaatctgcttcacagaaccagttctcctaacagtagcttggttgacctga |
132 |
Q |
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| T |
2362200 |
acttaactacctctatgtgctctacaagaaaatacttgatatataccttcaatctgcattacagaaccagttctgcaaacagtagcttgattgacctga |
2362102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 2364423 - 2364352
Alignment:
| Q |
61 |
gaaaatacatgatttctaccttcaatctgcttcacagaaccagttctcctaacagtagcttggttgacctga |
132 |
Q |
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| T |
2364423 |
gaaagtacatgatttataccttcaatctgctacacagaaccagttcttctaacacttgcttgattgacctga |
2364352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 2489698 - 2489779
Alignment:
| Q |
27 |
aatccatacttgactacctctacttgttcaacaagaaa-atacatgatttctaccttcaatctgcttcacagaaccagttct |
107 |
Q |
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| T |
2489698 |
aatccttacttgactacctctgtttgttctacaaaaaatatatatgatttataccttcaatctgcttcacagaatcagttct |
2489779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 5095616 - 5095543
Alignment:
| Q |
33 |
tacttgactacctctacttgttcaacaagaaaatacatgatttctaccttcaatctgcttcacagaaccagttc |
106 |
Q |
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| T |
5095616 |
tacttgactacctctatttgttcttcaagaaaatacatgagttttaccttcaatctacttcacaacaccagttc |
5095543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 2544001 - 2544053
Alignment:
| Q |
30 |
ccatacttgactacctctacttgttcaacaagaaaatacatgatttctacctt |
82 |
Q |
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| T |
2544001 |
ccatacttgactacctctacttgttctataagaaaatacatgatttatacctt |
2544053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 2369309 - 2369259
Alignment:
| Q |
276 |
cttttttacatccaaggagaacgatttaaagattctgcatcatttctactt |
326 |
Q |
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| T |
2369309 |
cttttttatatccaaggagcaccatttaaagattctgcaacatttttactt |
2369259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 2626872 - 2626816
Alignment:
| Q |
35 |
cttgactacctctacttgttcaacaagaaaatacatgatttctaccttcaatctgct |
91 |
Q |
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| T |
2626872 |
cttgactacctttatttgtactacaagaaaatacatgatttatacctctaatctgct |
2626816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 39536808 - 39536680
Alignment:
| Q |
28 |
atccatacttgactacctctactt-gttcaacaagaaaatacatgatttctaccttcaatctgcttcacagaaccagttctcctaacagtagcttggttg |
126 |
Q |
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| T |
39536808 |
atccatacttgactacctctattttgatctacaagtaaatacatgatttataccttcaatttgctttaaagaaccagtccttctaacactagcttgattg |
39536709 |
T |
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| Q |
127 |
acctgacgtgctccctggaaatcaccatc |
155 |
Q |
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| T |
39536708 |
atctgatgtgtgccctgcaaatcaacatc |
39536680 |
T |
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