View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17620_low_4 (Length: 310)
Name: NF17620_low_4
Description: NF17620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17620_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 5113148 - 5113427
Alignment:
| Q |
10 |
tataaagaggaggaagatagtgt-----gttggattgaaagggaggttacggtgtcaaa-tgtgtggctat---atgttatgttatgttatgtgtctatg |
100 |
Q |
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| T |
5113148 |
tataaagaggaggaggatagtgtagtatgttggattgaaagggaggttacggtgtcaaaatgtgtggctatgttatgttatgttatgttatgtgtctatg |
5113247 |
T |
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| Q |
101 |
aagttgatgaagaggttaagtatatgaaagagttatgaaaagtgaccaataagaaagaggcaacatgaagtaagaaagaaggggaaaaggacacttggaa |
200 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5113248 |
aaat-----------------atatgaaagagttatgaaaagtgaccaataagaaagaggcaacatgaagtaagaaagaaggggaaagggacacttggaa |
5113330 |
T |
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| Q |
201 |
ttgtacggtgggtacgtgttggttagagtgatgagagatgacatttggggattggccagaaaatgtgggtccatgcatgcttacacataatgatatt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5113331 |
ttgtacggtgggtacgtgttggttagagtgatgagagatgacatttggggattggccagaaaatgtgggtccatgcatgcttacacataatgatatt |
5113427 |
T |
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