View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17621_high_1 (Length: 602)
Name: NF17621_high_1
Description: NF17621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17621_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 18 - 596
Target Start/End: Original strand, 4093080 - 4093658
Alignment:
| Q |
18 |
agtaagggtatgcatatgactctagacatgtccctcccttgtactttggagtcatgagaacaagaacccttctctaatttcttgtttctttcttcaaacc |
117 |
Q |
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| T |
4093080 |
agtacgggtatgcatatgactctagacatgtccctcccttgtactttggagtcatgagaacaagaacccttctctaatttcttgtttctttcttcaaacc |
4093179 |
T |
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| Q |
118 |
ttaatgagttggggaagtacatgcgttctctgtctcctgatctaaatccaatcaactgtgcaagggatacactgttgtctttgaagaaagatgctgtaga |
217 |
Q |
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| T |
4093180 |
ttaatgagttggggaagtacattcgttctctgtctcctgatctaaatccaatcaactgtgcaagggatacactgttgtctttgaagaaagatgctgtaga |
4093279 |
T |
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| Q |
218 |
ctggttgtggccacaaaagaagaagtagaataaattgtaagcaggagacaagcttacaaccatataaataaaacataaagtgttcatagatttgcacata |
317 |
Q |
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| T |
4093280 |
ctggttgtggccacaaaagaagaagtagaataaattgtaagcaggagacaagcttacaagcatataaataaaacataaagtgttcatagatttgcacata |
4093379 |
T |
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| Q |
318 |
aaagtgaaaataacatattctttgaagtctcaaccatagacgggtatttgaaaatcgtttgaaactcaaacaacgacaaacattgccttctgaaagtaga |
417 |
Q |
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| T |
4093380 |
aaagtgaaaataacatattctttgaagtctcaaccatagactggtatttgaaaatcgtttgaaactcaaacaacgacaaacactgccttctgaaagtaga |
4093479 |
T |
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| Q |
418 |
aggactatcatctttctctattcatggatgagatgatgacttgattggtgttggttcgacaaaaacaatgggaaacgaattcatatttgtttttccttgt |
517 |
Q |
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| T |
4093480 |
aggacgatcatctttctctattcatggatgagatgatgacttgattggtgttggttcgacaaaaacaatgggaaacgaattcatatttgtttttccttgt |
4093579 |
T |
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| Q |
518 |
ttttgttgaatcgacaattatcaggtcatcgtctccgtcgtaagaataaggaggaggattgtgaacatctccatctcag |
596 |
Q |
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| T |
4093580 |
ttttgttgaatcgacaattatcaggtcatcgtctcagtcgtaagaataaggaggaggaccgtgaacatctacatctcag |
4093658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 35006383 - 35006430
Alignment:
| Q |
178 |
caagggatacactgttgtctttgaagaaagatgctgtagactggttgt |
225 |
Q |
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| T |
35006383 |
caagggatacactgttatctttaaagaatgatgctgttgactggttgt |
35006430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 40941071 - 40941103
Alignment:
| Q |
361 |
gtatttgaaaatcgtttgaaactcaaacaacga |
393 |
Q |
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| T |
40941071 |
gtatttgaaaatcgtttgaaactccaacaacga |
40941103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 419
Target Start/End: Complemental strand, 12631003 - 12630935
Alignment:
| Q |
350 |
accatagacgggtatttgaaaatcgtttgaaactcaaacaacgacaaacattgccttctgaaagtagaag |
419 |
Q |
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| T |
12631003 |
accatagactggtacttgaaaattgttctaaactcaa-caatgacagacattgccttctggaagtagaag |
12630935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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