View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17622_low_1 (Length: 648)
Name: NF17622_low_1
Description: NF17622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17622_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 2 - 632
Target Start/End: Original strand, 45217674 - 45218319
Alignment:
| Q |
2 |
gaaaacgaaatatgaagttaaatttatatttatcatgtgtttgataaatatctattataataatgagtaaaaattgattcaaattttttaaaggcacttg |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45217674 |
gaaaacgaaatatgaagttaaatttatatttatcatgtgtttgataaatatctatcataataatgagtaaaaattgattcaaattttttaaaggcacttg |
45217773 |
T |
|
| Q |
102 |
cacgtgtgtttgactcgaactattatactaatttttaacatagacactaacatgatcgatttgacaaacttgctatcatgcttcattcaaatgttcgtta |
201 |
Q |
| |
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| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45217774 |
cgcgtgtgtttgactcgaactattacactaatttttaacatagacactaacatgatcgatttgacaaacttgctatcatgcttcattcaaatgttcgtta |
45217873 |
T |
|
| Q |
202 |
tgtgaaggaaatatggtgaatgatgcaaataaattttggaaaatgctattttgtacggacgtattgcgcaagaattttcacggacgcgtg-aaagtaaca |
300 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
45217874 |
tgtgaaggaaatatagtgaatgatgcagataaattttggaaaatgctattttgtacggacgtattgcgcaagaattttcacggacgcatgaaaagtaaca |
45217973 |
T |
|
| Q |
301 |
tatttgcacgcgctgcagttctgtccaaaggaaaccacttgcaggcttgcagcagcaacacaaccgaaac----------caaaacagcccaacacaagt |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
45217974 |
tatttgcacgcgctgcagttctgtccaaaggaaaccacttgcaggcttgcagcagcaacacaactgaaaccaaaacaacacaaaacagcccaacacaagt |
45218073 |
T |
|
| Q |
391 |
tcaatccaggccgcaccgcacacatgcctgaaaaacaacaacaggtagcaagctttcttgctgataccgaaacacaaatgagtatcccagcctcactgtc |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45218074 |
tcaatccaggccgcaccgcacacatgcctgaaaaacaacagcaggcagcaagctttcttgctgataccgaaacacaaatgagtatcccaacctcactgtc |
45218173 |
T |
|
| Q |
491 |
aaaacccaccttcagcgccaataaacagcatgcaacagcaccaccatcaaaagtcaaaatccagcagataaacag-cccaacacctactac---tcatct |
586 |
Q |
| |
|
|||| |||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
45218174 |
aaaatccaccttcagtgccaataaatagcatgcaacaacaccaccatcaaaagtcaaaatccagcagataaacagccccaacacctactactcatcatct |
45218273 |
T |
|
| Q |
587 |
caccaagcattcctttgaattccaccaccaaaagagtacaatatca |
632 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45218274 |
caccaagcattcctttgaattccaccaccaaaagagtacaatatca |
45218319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 37166376 - 37166428
Alignment:
| Q |
239 |
ggaaaatgctattttgtacggacgtattgcgcaagaattttcacggacgcgtg |
291 |
Q |
| |
|
|||||||||||||||||||||| || || | ||||||||||||| ||||||| |
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|
| T |
37166376 |
ggaaaatgctattttgtacggatgttttccctaagaattttcacgaacgcgtg |
37166428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 239 - 632
Target Start/End: Complemental strand, 3579352 - 3578945
Alignment:
| Q |
239 |
ggaaaatgctattttgtacggacgtattgcgcaagaattttcacggacgcgtgaaagtaacatatttgcacgcgctgcagttctgtccaaaggaaaccac |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3579352 |
ggaaaatgctattttgtacggacgtattgcgcaagaattttcacggacgcgtgaaagtaacatatttgcacgcgctgcagttctgtccaaaggaaaccac |
3579253 |
T |
|
| Q |
339 |
ttgcaggcttgcagcagcaacacaaccgaaaccaaaaca----------gcccaacacaagttcaatccaggccgcaccgcacacatgcctgaaaaacaa |
428 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
3579252 |
ttgcaggcttgcagcagcaacacatccgaaaccaaaacaacacaaaacagcccaacacaagttcaatccaggccgcaccgcacacatgcttgaaaaacaa |
3579153 |
T |
|
| Q |
429 |
caacaggtagcaagctttcttgctgataccgaaacacaaatgagtatcccagcctcactgtcaaaacccaccttcagcgccaataaacagcatgcaacag |
528 |
Q |
| |
|
|| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3579152 |
cagcaggcagcaaactttcttgctgataccgaaacacaaatgagtatcccagcctcactgtcaaaacccaccttcagcgccaataaacagcatgcaacaa |
3579053 |
T |
|
| Q |
529 |
caccaccatcaaaagtcaaaatccagcagataaacag-cccaacacctactac---tcatctcaccaagcattcctttgaattccaccaccaaaagagta |
624 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3579052 |
caccaccatcaaaagtcaaaatccagcagataaacagccccaacacctactactcatcatctcaccaagcattcctttgaattccaccaccaaaagagta |
3578953 |
T |
|
| Q |
625 |
caatatca |
632 |
Q |
| |
|
|||||||| |
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|
| T |
3578952 |
caatatca |
3578945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 233 - 632
Target Start/End: Complemental strand, 3565599 - 3565189
Alignment:
| Q |
233 |
aattttggaaaatgctattttgtacggacgtattgcgcaagaattttcacggacgcgtgaaagtaacatatttgcacgcgctgcagttctgtccaaagga |
332 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3565599 |
aattatggaaaatgctattttgtacggacgtattgcgcaagaattttcacggacgcgtgaaagtaacatatttgcacgcgctgcagttctgtccaaagga |
3565500 |
T |
|
| Q |
333 |
aaccacttgcaggcttgcagcagcaacacaaccgaaaccaa---------------------aacagcccaacacaagttcaatccaggccgcaccgcac |
411 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| |||||| |
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|
| T |
3565499 |
aaccacttgcaggcttgcaacagcaacacagccgaaaccaaaacaacacacaactaacacaaaacagcccaacacaagttcaatccagg-----ccgcac |
3565405 |
T |
|
| Q |
412 |
acatgcctgaaaaacaacaacaggtagcaagctttcttgctgataccgaaacacaaatgagtatcccagcctcactgtcaaaacccaccttcagcgccaa |
511 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
3565404 |
acatgcctgaaaaacaacagcaggcagcaagctttcttgctgatatcgaaacacaaatgagtatcccaacctcactgtcaaaacccaccttcagtgccaa |
3565305 |
T |
|
| Q |
512 |
taaacagcatgcaacagcaccaccatcaaaagtcaaaatccagcagataaacag-cccaacacctactactcatctcaccaagcattcctttgaattcca |
610 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3565304 |
taaacaacat------gcaccaccatcaaaagacaaaatccagcagataaacagccccaacacctactactcatctcaccaagcattcctttgaattcca |
3565211 |
T |
|
| Q |
611 |
ccaccaaaagagtacaatatca |
632 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3565210 |
ccaccaaaagagtacaatatca |
3565189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 241 - 329
Target Start/End: Original strand, 10971141 - 10971229
Alignment:
| Q |
241 |
aaaatgctattttgtacggacgtattgcgcaagaattttcacggacgcgtgaaagtaacatatttgcacgcgctgcagttctgtccaaa |
329 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||| || | |||||||||||| ||| |||||||||||||| |
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|
| T |
10971141 |
aaaatgctattttgtacggatgtattgggcaagaattttcacggacgcgtgtaatcatcatatttgcacgtgctacagttctgtccaaa |
10971229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 241 - 324
Target Start/End: Complemental strand, 10972637 - 10972554
Alignment:
| Q |
241 |
aaaatgctattttgtacggacgtattgcgcaagaattttcacggacgcgtgaaagtaacatatttgcacgcgctgcagttctgt |
324 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||| || | |||||||||||| ||| ||||||||| |
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|
| T |
10972637 |
aaaatgctattttgtacggatgtattgggcaagaattttcacggacgcgtgtaatcatcatatttgcacgtgctacagttctgt |
10972554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 445 - 531
Target Start/End: Complemental strand, 13575423 - 13575334
Alignment:
| Q |
445 |
ttcttgctgataccgaaac-acaaatgagtat--cccagcctcactgtcaaaacccaccttcagcgccaataaacagcatgcaacagcac |
531 |
Q |
| |
|
||||||||||||||||||| ||||||||| || |||||| |||| ||||||| |||| | || | |||||||||| | ||||||||||| |
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|
| T |
13575423 |
ttcttgctgataccgaaaccacaaatgagaataccccagcgtcacagtcaaaaaccacatacaacaccaataaacaacctgcaacagcac |
13575334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 40166704 - 40166761
Alignment:
| Q |
263 |
tattgcgcaagaattttcacggacgcgtgaaagtaacatatttgcacgcgctgcagtt |
320 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
40166704 |
tattgcgtaagaattttcacggacgcgtgaaaacattatatttgcacgcgctgcagtt |
40166761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 413289 - 413348
Alignment:
| Q |
235 |
ttttggaaaatgctattttgtacggacgtattgcgcaagaattttcacggacgcgtgaaa |
294 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| |||||||| |||||| |||||||| |
|
|
| T |
413289 |
ttttggaaaatgctattttgtacggaagtgttgtgcaagaatactcacgggagcgtgaaa |
413348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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