View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17622_low_2 (Length: 373)
Name: NF17622_low_2
Description: NF17622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17622_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 84 - 361
Target Start/End: Original strand, 40683033 - 40683310
Alignment:
| Q |
84 |
taagcaaactgcacacaattcatgatcttgtacatgtaacatcttgcagaagaatcccagctgaggttgtaatattgtagacattttgcgaaataacaaa |
183 |
Q |
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| T |
40683033 |
taagcacactgcacacaattcatgatcttgtacatgtaacaccttgcagaagaatcccagctgaggttgtaatattgtagacattttgcgaaataacaaa |
40683132 |
T |
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| Q |
184 |
gctaagtgggtagcaaacaaccttcaaagttatccagttggattcatagatatctttcttaaactggatggaagtgaacaatttgagaccgaattcaacc |
283 |
Q |
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| T |
40683133 |
gctaagtgggtagcaaacaaccttcaaagttatccagttggattcaaagatatctttcttaaactggatggaagtgaacaatttgagaccgaattcaacc |
40683232 |
T |
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| Q |
284 |
cttccatgttcttggcggctacgataaatgttgttagtcacgtgaggctcacacgagtctaccttcagcttcatctca |
361 |
Q |
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| T |
40683233 |
cttccatgttctcggcggctacgataaatgttgttagtcacgtgaggctcacacgagtctaccttcagcttcatctca |
40683310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 294
Target Start/End: Original strand, 40672786 - 40672923
Alignment:
| Q |
157 |
attgtagacattttgcgaaataacaaagctaagtgggtagcaaacaaccttcaaagttatccagttggattcatagatatctttcttaaactggatggaa |
256 |
Q |
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|||||||||||||| |||||| ||||||| ||||||||||||||| ||||||| | ||| ||||| || |||||| |||| ||| ||||||| |
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| T |
40672786 |
attgtagacatttttcgaaattccaaagcttagtgggtagcaaacatacttcaaatgtttccgattggaaacaaagatataactcttgaacccgatggaa |
40672885 |
T |
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| Q |
257 |
gtgaacaatttgagaccgaattcaacccttccatgttc |
294 |
Q |
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| T |
40672886 |
gtgaacactttgagcccgaatgcaacccttccatgttc |
40672923 |
T |
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