View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17622_low_3 (Length: 272)
Name: NF17622_low_3
Description: NF17622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17622_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 53 - 256
Target Start/End: Complemental strand, 3579175 - 3578969
Alignment:
| Q |
53 |
ccgcacacatgcctgaaaaacaacaggaggcagcaagctttcttgctgataccgaaacacaaatgagtatcccagcctcactgtcaaaacccaccttcgg |
152 |
Q |
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| T |
3579175 |
ccgcacacatgcttgaaaaacaacagcaggcagcaaactttcttgctgataccgaaacacaaatgagtatcccagcctcactgtcaaaacccaccttcag |
3579076 |
T |
|
| Q |
153 |
cgccaataaacagcatgcaacaacaccaccatcaaaagacaaaatccagcagataaacagccccaacacctactact---catctcaccaagcattcctt |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3579075 |
cgccaataaacagcatgcaacaacaccaccatcaaaagtcaaaatccagcagataaacagccccaacacctactactcatcatctcaccaagcattcctt |
3578976 |
T |
|
| Q |
250 |
tgaattc |
256 |
Q |
| |
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||||||| |
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| T |
3578975 |
tgaattc |
3578969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 53 - 256
Target Start/End: Original strand, 45218089 - 45218295
Alignment:
| Q |
53 |
ccgcacacatgcctgaaaaacaacaggaggcagcaagctttcttgctgataccgaaacacaaatgagtatcccagcctcactgtcaaaacccaccttcgg |
152 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | |
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| T |
45218089 |
ccgcacacatgcctgaaaaacaacagcaggcagcaagctttcttgctgataccgaaacacaaatgagtatcccaacctcactgtcaaaatccaccttcag |
45218188 |
T |
|
| Q |
153 |
cgccaataaacagcatgcaacaacaccaccatcaaaagacaaaatccagcagataaacagccccaacacctactac---tcatctcaccaagcattcctt |
249 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45218189 |
tgccaataaatagcatgcaacaacaccaccatcaaaagtcaaaatccagcagataaacagccccaacacctactactcatcatctcaccaagcattcctt |
45218288 |
T |
|
| Q |
250 |
tgaattc |
256 |
Q |
| |
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||||||| |
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| T |
45218289 |
tgaattc |
45218295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 44 - 256
Target Start/End: Complemental strand, 3565419 - 3565213
Alignment:
| Q |
44 |
caatcaaggccgcacacatgcctgaaaaacaacaggaggcagcaagctttcttgctgataccgaaacacaaatgagtatcccagcctcactgtcaaaacc |
143 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
3565419 |
caatccaggccgcacacatgcctgaaaaacaacagcaggcagcaagctttcttgctgatatcgaaacacaaatgagtatcccaacctcactgtcaaaacc |
3565320 |
T |
|
| Q |
144 |
caccttcggcgccaataaacagcatgcaacaacaccaccatcaaaagacaaaatccagcagataaacagccccaacacctactactcatctcaccaagca |
243 |
Q |
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||||||| | ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3565319 |
caccttcagtgccaataaacaacatg------caccaccatcaaaagacaaaatccagcagataaacagccccaacacctactactcatctcaccaagca |
3565226 |
T |
|
| Q |
244 |
ttcctttgaattc |
256 |
Q |
| |
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||||||||||||| |
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|
| T |
3565225 |
ttcctttgaattc |
3565213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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