View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17622_low_4 (Length: 243)
Name: NF17622_low_4
Description: NF17622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17622_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 52351511 - 52351732
Alignment:
| Q |
7 |
aacattttgtaagccttcaatgctcagttttccttctagctttagatcacgtaactctgccaagttgtgccccgtctttgatctgactacgtatacactt |
106 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
52351511 |
aacattttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaagttgtgccccgtttttgatctgactatgtatacactt |
52351610 |
T |
|
| Q |
107 |
actgttcttagggaagataatcttccaatgtaagggaacatacaagacaatgaaaaacaatcttcaatgataagatgtctgagatgttttaagcaagtca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52351611 |
actgttcttagggaagataatcttccaatgtaagggaacatacaagacaatgaaaaacaatcttcaatgataagatgtctgagatgttttaagcaattca |
52351710 |
T |
|
| Q |
207 |
aacgttctggtagacaaagaag |
228 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
52351711 |
aacgttctggtagacaaagaag |
52351732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 176
Target Start/End: Complemental strand, 20297151 - 20296980
Alignment:
| Q |
5 |
ccaacattttgtaagccttcaatgctcagttttccttctagctttagatcacgtaactctgccaagttgtgccccgtctttgatctgactacgtatacac |
104 |
Q |
| |
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||||||| || |||||||| || ||||||||||| | || ||||||||||||||||||| |||| | | ||| ||||| | || || | ||| |||| |
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| T |
20297151 |
ccaacatcttttaagcctttgatactcagttttccaccaagttttagatcacgtaactctgtcaagctattccctttctttaaactaacaatgtacacac |
20297052 |
T |
|
| Q |
105 |
ttactgttcttagggaagataatcttccaatgtaagggaacatacaagacaatgaaaaacaatcttcaatga |
176 |
Q |
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||| ||||||||| |||||||| |||||||| ||| ||||| | |||||| || ||||||||||||||| |
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| T |
20297051 |
ttaatgttcttagacaagataattttccaatgctaggaaacattcgagacaaagaccaacaatcttcaatga |
20296980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 30522162 - 30521958
Alignment:
| Q |
25 |
aatgctcagttttccttctagctttagatcacgtaactctgccaagttgtgccccgtctttgatctgactacgtatacacttactgttcttagggaagat |
124 |
Q |
| |
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|||||| |||||||| |||||||||||||| |||| ||||||||| ||| || ||| | | | ||| | || | ||||| |||||||||||||||| |
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| T |
30522162 |
aatgcttagttttccccctagctttagatcatgtaattctgccaagctgtatccaatctctaaacggacaatgtgtttacttaatgttcttagggaagat |
30522063 |
T |
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| Q |
125 |
aatcttccaatgtaagggaacatacaagacaatgaaaaacaatcttcaatgataagatgtctgagatgttttaagcaagtcaaacgttctggtagacaaa |
224 |
Q |
| |
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||| | ||||||| |||||||| || ||||||| | ||||| |||||| | |||||||||||||| || |||||||||||| |||| ||||||||| |
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| T |
30522062 |
aatttaccaatgttagggaacacacgggacaatgcatcacaattttcaataacaagatgtctgagattttgtaagcaagtcaagtgttccggtagacaac |
30521963 |
T |
|
| Q |
225 |
gaagt |
229 |
Q |
| |
|
||||| |
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|
| T |
30521962 |
gaagt |
30521958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 30562502 - 30562298
Alignment:
| Q |
25 |
aatgctcagttttccttctagctttagatcacgtaactctgccaagttgtgccccgtctttgatctgactacgtatacacttactgttcttagggaagat |
124 |
Q |
| |
|
|||||| |||||||| |||||||||||||| |||| ||||||||| ||| || ||| | | | ||| | || | ||||| |||||||||||||||| |
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| T |
30562502 |
aatgcttagttttccccctagctttagatcatgtaattctgccaagctgtatccaatctctaaacggacaatgtgtttacttaatgttcttagggaagat |
30562403 |
T |
|
| Q |
125 |
aatcttccaatgtaagggaacatacaagacaatgaaaaacaatcttcaatgataagatgtctgagatgttttaagcaagtcaaacgttctggtagacaaa |
224 |
Q |
| |
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||| | ||||||| |||||||| || ||||||| | ||||| |||||| | |||||||||||||| || |||||||||||| |||| ||||||||| |
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| T |
30562402 |
aatttaccaatgttagggaacacacgggacaatgcatcacaattttcaataacaagatgtctgagattttgtaagcaagtcaagtgttccggtagacaac |
30562303 |
T |
|
| Q |
225 |
gaagt |
229 |
Q |
| |
|
||||| |
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|
| T |
30562302 |
gaagt |
30562298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 30475016 - 30475139
Alignment:
| Q |
97 |
gtatacacttactgttcttagggaagataatcttccaatgtaagggaacatacaagacaatgaaaaacaatcttcaatgataagatgtctgagatgtttt |
196 |
Q |
| |
|
||||||||||| |||||||||| || | ||| ||||||| ||||| |||| ||||||||||||| |||||||||||||| |||||| ||||||| | | |
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| T |
30475016 |
gtatacacttaatgttcttaggaaatacaattttccaatataaggaaacacacaagacaatgaattacaatcttcaatgacaagatgcctgagattctgt |
30475115 |
T |
|
| Q |
197 |
aagcaagtcaaacgttctggtaga |
220 |
Q |
| |
|
|| |||||||| ||| ||||||| |
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| T |
30475116 |
aaacaagtcaagtgttttggtaga |
30475139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 30430518 - 30430563
Alignment:
| Q |
25 |
aatgctcagttttccttctagctttagatcacgtaactctgccaag |
70 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| |||| ||||||||| |
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| T |
30430518 |
aatgcttagttttcctcctagctttagatcatgtaattctgccaag |
30430563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 7098963 - 7099185
Alignment:
| Q |
1 |
actaccaacattttgtaagccttcaatgctcagttttccttctagctttagatcacgtaactctgccaagttgtgccccgtctttgatctgactacgtat |
100 |
Q |
| |
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||||||||||||||||||||||| || ||| |||||| ||| |||||||||||||||||||| ||| | || || ||| | | || | || |
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| T |
7098963 |
actaccaacattttgtaagcctttgatctccagctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataa |
7099062 |
T |
|
| Q |
101 |
acacttactgttcttagggaagataatcttccaatgtaagggaacatacaagacaatgaaaaacaatcttcaatgataagatgtctgagatgttttaagc |
200 |
Q |
| |
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||||||| ||||||| | |||||||| ||||||||| ||| ||||| | |||||||||| |||| |||||||||| | |||||| |||| || ||||| |
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|
| T |
7099063 |
acacttaaggttcttaagcaagataattttccaatgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagc |
7099162 |
T |
|
| Q |
201 |
aagtcaaacgttctggtagacaa |
223 |
Q |
| |
|
||| ||| ||||||| |||||| |
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|
| T |
7099163 |
aagacaagtgttctggaagacaa |
7099185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 26706887 - 26706952
Alignment:
| Q |
5 |
ccaacattttgtaagccttcaatgctcagttttccttctagctttagatcacgtaactctgccaag |
70 |
Q |
| |
|
||||||| || ||||||||| || ||||||||||| | || ||||||||||||||||||| |||| |
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| T |
26706887 |
ccaacatcttttaagccttcgatactcagttttccaccgaggtttagatcacgtaactctgtcaag |
26706952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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