View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17623_high_1 (Length: 314)
Name: NF17623_high_1
Description: NF17623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17623_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 37852492 - 37852197
Alignment:
| Q |
1 |
aaagcaggatttaatatcaaggtcagaattaatggattttggatttgcatagttgctttggtattttgttttactagagcatgctcctcaactatgatgc |
100 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37852492 |
aaagcaggcttcaatatcaaggtcagaattaatggattttggatttgcatagttgctttggtattttgttttactagagcatgctcctcaactatgatgc |
37852393 |
T |
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| Q |
101 |
atgtgatctataacatcaatatgcaaaattctgatatgattacctttaactaactttcacatcgaacataatatacctattttgttattttgttttacat |
200 |
Q |
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| T |
37852392 |
atgtgatctataaaatcaatatgcaaaattctgatatgattacctttaactaactttcacatcgaacataatatacctattt--------tgttttacat |
37852301 |
T |
|
| Q |
201 |
cgaatatcaatatgcatggatcttaatttttcaagtttatcttctttcctatgttggttcttgtgtcctcattgttatctgtcaatgcaaaatcgcagcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37852300 |
cgaatatcaatatgcatggatcttaatttttcaagtttatcttctttcctatgttggttcttgtgtcctcattgttatctgtcgatgcaaaatcgcagcc |
37852201 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 32557073 - 32557036
Alignment:
| Q |
267 |
cctcattgttatctgtcaatgcaaaatcgcagcctttg |
304 |
Q |
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| T |
32557073 |
cctcattgttatctgtcaatgcaaaatcgctgcctttg |
32557036 |
T |
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