View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17624_high_1 (Length: 396)
Name: NF17624_high_1
Description: NF17624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17624_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 42 - 241
Target Start/End: Complemental strand, 39902444 - 39902245
Alignment:
| Q |
42 |
gaacctgtgggaaagttgtagtttgaagctttgagaagagattgatgaagttgttaggactatatatcaacattatgcattcctcaatcaatggcaatgg |
141 |
Q |
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| T |
39902444 |
gaacctgtgggaaagttgtagtttgaagctttgagaagagattgatgaagttgttaggactatatatcaacattatgcattcctcaatcaatggcaatgg |
39902345 |
T |
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| Q |
142 |
atgagattgcaagactcaaacacgattgtagcttggccacgggtagatttggtcaaatggatcatacctccaaacaggttgaaaagcaatattgaggtag |
241 |
Q |
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| T |
39902344 |
atgagattgcaagactcaaacacgattgtagcttggccacgggtagatttggtcaaatggatcatacctccaaacaggttgaaaagcaatattgatgtag |
39902245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 294 - 371
Target Start/End: Complemental strand, 39902097 - 39902020
Alignment:
| Q |
294 |
atgaggttgaggatgttgattttaaacttgatgcataaattttatcttattttggttgatttatccaaactcgatgat |
371 |
Q |
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| T |
39902097 |
atgaggttgaagatgttgattttaaacttgatgcataaattttatcttattttggttggtttatccaaactcgatgat |
39902020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 39902147 - 39902113
Alignment:
| Q |
238 |
gtagaagaggcgtaggctcatgggttcactaaaag |
272 |
Q |
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| T |
39902147 |
gtagaagaggcgtaggctcatgggttcactaaaag |
39902113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 298
Target Start/End: Complemental strand, 39902012 - 39901979
Alignment:
| Q |
265 |
actaaaaggcaaactaattattacatttcatgag |
298 |
Q |
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| T |
39902012 |
actaaaaggcaaactaattattacatttcatgag |
39901979 |
T |
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