View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17624_high_10 (Length: 320)
Name: NF17624_high_10
Description: NF17624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17624_high_10 |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 23427127 - 23426826
Alignment:
| Q |
1 |
tggaatttgactattagacaacataggatcttattaccgatactaagcagaatgaatttcaccctcatggaactttgttttctctcgtcaagatgctctc |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23427127 |
tggaatttgactattagccaacataggatcttattaccgatattaagcagaatgaatttcaccctcatggaactttgttttctctcgtcaagatgctctc |
23427028 |
T |
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| Q |
101 |
ttccctttcatgtgtggtctcctttaaccatacttttcgagagnnnnnnnnnggtgcaagttgattgtctaagtttggtgctactaatgtcgattccttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23427027 |
ttccctttcatgtgtggtctcctttaaccatactttgtgagagaaaaaaaaa-gtgcaagttgattgtctaagtttggtgctactaatgtcgattcctta |
23426929 |
T |
|
| Q |
201 |
gttgtggatttctcatacttcttaattgaatatcattctgcttg---------ccagtgtgtgtaggtgtaagagttctttggctggggtcatacttaca |
291 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| |||| |||||||||| || |
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| T |
23426928 |
gttgtggatttctcatacttcttaattgaatatcatcctgcttgcaaatacctccactgtgtgtaggtgtaagagttcttttgctgaggtcatacttcca |
23426829 |
T |
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| Q |
292 |
tga |
294 |
Q |
| |
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||| |
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| T |
23426828 |
tga |
23426826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 174774 - 174664
Alignment:
| Q |
26 |
ggatcttattaccgatactaagcagaatgaatttcaccctcatggaactttgttttctctcgtcaagatgctctcttccctttcatgtgtggtctccttt |
125 |
Q |
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| T |
174774 |
ggatattattgcggatactaataagaatgactttcatcctcatgcaaacttgttctctctcgttaagaggctctcttctctttcttgggtggtctccttt |
174675 |
T |
|
| Q |
126 |
aaccatacttt |
136 |
Q |
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| T |
174674 |
aatcatacttt |
174664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 142654 - 142544
Alignment:
| Q |
26 |
ggatcttattaccgatactaagcagaatgaatttcaccctcatggaactttgttttctctcgtcaagatgctctcttccctttcatgtgtggtctccttt |
125 |
Q |
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|||| ||||| | |||||||| ||||||| ||||| ||||||| || ||||| |||||||| |||| ||||||||| ||||| | |||||||||||| |
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| T |
142654 |
ggatattattgcggatactaataagaatgactttcatcctcatgcaaacttgttctctctcgttaagaggctctcttctctttctttggtggtctccttt |
142555 |
T |
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| Q |
126 |
aaccatacttt |
136 |
Q |
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|| |||||||| |
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| T |
142554 |
aatcatacttt |
142544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 20012886 - 20012983
Alignment:
| Q |
39 |
gatactaagcagaatgaatttcaccctcatggaactttgttttctctcgtcaagatgctctcttccctttcatgtgtggtctcctttaaccatacttt |
136 |
Q |
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| T |
20012886 |
gatactaataagaatgactttcatccttatgcaaacttgctctctctcgttaagaggctttcttctctttcttgggtggtctcctttaatcatacttt |
20012983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 16437036 - 16436984
Alignment:
| Q |
161 |
ttgattgtctaagtttggtgctactaatgtcgattccttg--gttgtggattt |
211 |
Q |
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||||||| |||||||||||||||||||| |||||| |||| ||||||||||| |
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| T |
16437036 |
ttgattggctaagtttggtgctactaatatcgattacttgaagttgtggattt |
16436984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 4415168 - 4415060
Alignment:
| Q |
28 |
atcttattaccgatactaagcagaatgaatttcaccctcatggaactttgttttctctcgtcaagatgctctcttccctttcatgtgtggtctcctttaa |
127 |
Q |
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|||||||| | |||| ||| ||||| || ||||| || ||||||| ||||||||||||| | | || ||||||||| || || |||||||||||||| |
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| T |
4415168 |
atcttattgcggatattaatcagaacgactttcatccacatggaaatttgttttctctcattaggaagctctcttcttttctttgggtggtctcctttaa |
4415069 |
T |
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| Q |
128 |
ccatacttt |
136 |
Q |
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|||||||| |
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| T |
4415068 |
tcatacttt |
4415060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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